Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq401307 167 7e-38 >seq401307 Length=51916 Score = 167 bits (184), Expect = 7e-38 Identities = 270/387 (70%), Gaps = 1/387 (0%) Strand=Plus/Plus Query 1286 GCTGGGCCCAGAAAAAGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCCGCCACCA 1345 ||||||||| | ||||| ||| ||||| |||||||| | | | || || |||| Sbjct 14032 GCTGGGCCCGGTGGGAGTTCAACAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCA 14091 Query 1346 CCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCA 1405 || ||||||| | ||| | ||| || ||||||| || ||||| || || ||||| | | Sbjct 14092 CCAGCAAGACAAGCATCGTGGAGGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAA 14151 Query 1406 ACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGG 1465 ||||||| ||||||||||| || ||||| || || | || |||||||||| ||||||| Sbjct 14152 ACTGGACTAATGAGAACTTGCCTTTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGG 14211 Query 1466 AGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCA 1525 |||| || |||||||| || | || ||||| || || |||||| | | || Sbjct 14212 AGGAAGGAAAGATGACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGTTGGGTTGG 14271 Query 1526 AGGTGC-GCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATC 1584 |||| | || || ||||| || || |||| || || || || || || || | Sbjct 14272 CTGTGCGGGGTTGATCAAAAATGTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTT 14331 Query 1585 GTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCAC 1644 | ||| || || | | ||| || ||| |||| ||||||||||| ||||| || || Sbjct 14332 ATTACCAGTAATACATATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACAT 14391 Query 1645 CAGCAGCCGTTGCAGGACCGGATGTTC 1671 || || ||| |||| | |||||| Sbjct 14392 AAGGGACCTTTGGAGGAAAGAATGTTC 14418 Score = 114 bits (126), Expect = 4e-22 Identities = 225/326 (69%), Gaps = 15/326 (5%) Strand=Plus/Plus Query 3040 CTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACT- 3098 |||||| || ||||||||||| |||| || | ||||| ||||||||||| ||||||| Sbjct 15839 CTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTG 15897 Query 3099 ---TCTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGA 3155 |||| || ||||| ||||| |||||| ||||| ||||||| |||| || ||| Sbjct 15898 GAGTCTC----CGAGACTGTCAGCGGCTCATCCACAACTACTGGGGCATCCGACCAAAG- 15952 Query 3156 AGCT--GCGGTTCAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGACGAATGACGGCGT 3213 ||| | |||| | |||||||| || || |||||||||| | | | ||| Sbjct 15953 -GCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCAC 16011 Query 3214 TACGACCATCGCTAATAACCTTACCAGCACGATTCAGGTATTCTCGGACTCGGAATACCA 3273 | ||| || || |||||||| || || || ||| | || | || |||||| Sbjct 16012 AAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATACCA 16071 Query 3274 GCTGCCGTACGTCCTCGGCTCTGCGCAC-CAGGGCTGCCTGCCTCCGTTCCCGGCGGACG 3332 |||||| || || | || ||| ||| |||| ||| |||| | || || | || | Sbjct 16072 GCTGCCCTATGTGATTGGAAATGC-CACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATG 16130 Query 3333 TCTTCATGATTCCTCAGTACGGCTAC 3358 | || ||| | ||||||||| | ||| Sbjct 16131 TTTTTATGTTGCCTCAGTACTGGTAC 16156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14926078969560