Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq401307 163 8e-37 >seq401307 Length=51916 Score = 163 bits (180), Expect = 8e-37 Identities = 236/332 (71%), Gaps = 1/332 (0%) Strand=Plus/Plus Query 1212 GCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCA 1271 ||||| |||||||| | | |||| || |||||| ||||||| | ||| | ||| || | Sbjct 14059 GCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTA 14118 Query 1272 TCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCA 1331 |||||| || ||||| || || ||||| | |||||||| ||||||||||| || |||| Sbjct 14119 TCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTGCCTTTCA 14178 Query 1332 ATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCG 1391 |||| || | || |||||||||| ||||||||||| || |||||||| || | | Sbjct 14179 ATGACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAAAATTG 14238 Query 1392 TGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGC-GCGTGGACCAAAAGTGCAAG 1450 | ||||| || || |||||| | | || |||| | || || ||||| || || Sbjct 14239 TAGAGTCTGCTAAAGCCATTTTGGTTGGGTTGGCTGTGCGGGGTTGATCAAAAATGTAAA 14298 Query 1451 TCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCC 1510 |||| || || || || || || || | | ||| || || | | ||| || Sbjct 14299 GGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGTGTGCT 14358 Query 1511 GTGATTGACGGGAACAGCACCACCTTCGAGCA 1542 ||| |||| ||||||||||| ||||| || || Sbjct 14359 GTGGTTGATGGGAACAGCACTACCTTGGAACA 14390 Score = 149 bits (164), Expect = 2e-32 Identities = 225/319 (71%), Gaps = 1/319 (0%) Strand=Plus/Plus Query 2942 CTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTT 3001 |||||| || ||||||||||| |||| || | ||||| ||||||||||| ||||||| Sbjct 15839 CTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTG 15897 Query 3002 TTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAGACT 3061 | || ||||| ||||| |||||| ||||| ||||||| |||| || ||| Sbjct 15898 GAGTCTCCGAGACTGTCAGCGGCTCATCCACAACTACTGGGGCATCCGACCAAAGGCTTG 15957 Query 3062 CAGCTTCAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGCAGAATGAAGGCACCAAGAC 3121 || |||| | |||||||| || || |||||||||| | || | |||||| ||||| Sbjct 15958 TAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGAC 16017 Query 3122 CATCGCCAATAACCTCACCAGCACCATCCAGGTGTTTACGGACTCGGAGTACCAGCTGCC 3181 || ||||||||||| || ||||||||| | ||| | || ||||||||||| Sbjct 16018 AATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCC 16077 Query 3182 GTACGTTCTCGGCTCTGCCCACCAGGGCTGCCTGCCTCCGTTCCCGGCGGACGTGTTCAT 3241 || || | || |||| |||| ||| |||| | || || | || || || || Sbjct 16078 CTATGTGATTGGAAATGCCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTAT 16137 Query 3242 GATTCCCCAGTACGGCTAC 3260 | | || |||||| | ||| Sbjct 16138 GTTGCCTCAGTACTGGTAC 16156 Score = 89.7 bits (98), Expect = 1e-14 Identities = 180/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 3969 CAGGGTCCCATCTGGGCCAAGATTCCTCACACGGACGGCAACTTCCACCCGTCTCCGCTG 4028 ||||| || || ||||| || |||||| |||| || ||||| || || ||| Sbjct 16840 CAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAATTTTTGGCCTCGTCCTAAC 16899 Query 4029 ATGGGCGGCTTTGGCCTGAAACATCCTCCGCCTCAGATCCTGATCAAGAACACGCCTGTA 4088 ||||| ||||||| |||||||| || || ||| ||| || || || || || Sbjct 16900 ATGGGAAGCTTTGGGTGCAAACATCCACCTCCGATGATTCTGCAGAAAAATACTCCAGTC 16959 Query 4089 CCTGCGGATCCTCCGACCACCTTCAACCAGTCAAAGC---TGAACTCTTTCATCACGCAA 4145 ||||| || ||||| | |||||| | || || | || ||||| || | || Sbjct 16960 CCTGCAGAACCTCCTGCGGCCTTCACTGA---AACGCCTATTAAGTCTTTTATTAGTCAG 17016 Query 4146 TACAGCACCGGACAGGTCAGCGTGGAAATTGAATGGGAGCTGCAGAAGGAAAACAGCAAG 4205 || ||| || ||||| | ||||||||||| ||||||| | ||| |||||| Sbjct 17017 TATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCGAAAATCAGAATCCAGCAAA 17076 Query 4206 CGCTGGAACCCCGAGATCCAGTACAC 4231 |||||||| || |||||||| | ||| Sbjct 17077 CGCTGGAATCCAGAGATCCAATTCAC 17102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13881317146680