Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_006261.1
Length=4393
Score E
Sequences producing significant alignments: (Bits) Value
seq401307 163 8e-37
>seq401307
Length=51916
Score = 163 bits (180), Expect = 8e-37
Identities = 236/332 (71%), Gaps = 1/332 (0%)
Strand=Plus/Plus
Query 1212 GCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCA 1271
||||| |||||||| | | |||| || |||||| ||||||| | ||| | ||| || |
Sbjct 14059 GCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTA 14118
Query 1272 TCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCA 1331
|||||| || ||||| || || ||||| | |||||||| ||||||||||| || ||||
Sbjct 14119 TCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTGCCTTTCA 14178
Query 1332 ATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCG 1391
|||| || | || |||||||||| ||||||||||| || |||||||| || | |
Sbjct 14179 ATGACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAAAATTG 14238
Query 1392 TGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGC-GCGTGGACCAAAAGTGCAAG 1450
| ||||| || || |||||| | | || |||| | || || ||||| || ||
Sbjct 14239 TAGAGTCTGCTAAAGCCATTTTGGTTGGGTTGGCTGTGCGGGGTTGATCAAAAATGTAAA 14298
Query 1451 TCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCC 1510
|||| || || || || || || || | | ||| || || | | ||| ||
Sbjct 14299 GGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGTGTGCT 14358
Query 1511 GTGATTGACGGGAACAGCACCACCTTCGAGCA 1542
||| |||| ||||||||||| ||||| || ||
Sbjct 14359 GTGGTTGATGGGAACAGCACTACCTTGGAACA 14390
Score = 149 bits (164), Expect = 2e-32
Identities = 225/319 (71%), Gaps = 1/319 (0%)
Strand=Plus/Plus
Query 2942 CTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTT 3001
|||||| || ||||||||||| |||| || | ||||| ||||||||||| |||||||
Sbjct 15839 CTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTG 15897
Query 3002 TTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAGACT 3061
| || ||||| ||||| |||||| ||||| ||||||| |||| || |||
Sbjct 15898 GAGTCTCCGAGACTGTCAGCGGCTCATCCACAACTACTGGGGCATCCGACCAAAGGCTTG 15957
Query 3062 CAGCTTCAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGCAGAATGAAGGCACCAAGAC 3121
|| |||| | |||||||| || || |||||||||| | || | |||||| |||||
Sbjct 15958 TAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGAC 16017
Query 3122 CATCGCCAATAACCTCACCAGCACCATCCAGGTGTTTACGGACTCGGAGTACCAGCTGCC 3181
|| ||||||||||| || ||||||||| | ||| | || |||||||||||
Sbjct 16018 AATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACATACCAGCTGCC 16077
Query 3182 GTACGTTCTCGGCTCTGCCCACCAGGGCTGCCTGCCTCCGTTCCCGGCGGACGTGTTCAT 3241
|| || | || |||| |||| ||| |||| | || || | || || || ||
Sbjct 16078 CTATGTGATTGGAAATGCCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTAT 16137
Query 3242 GATTCCCCAGTACGGCTAC 3260
| | || |||||| | |||
Sbjct 16138 GTTGCCTCAGTACTGGTAC 16156
Score = 89.7 bits (98), Expect = 1e-14
Identities = 180/266 (68%), Gaps = 6/266 (2%)
Strand=Plus/Plus
Query 3969 CAGGGTCCCATCTGGGCCAAGATTCCTCACACGGACGGCAACTTCCACCCGTCTCCGCTG 4028
||||| || || ||||| || |||||| |||| || ||||| || || |||
Sbjct 16840 CAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAATTTTTGGCCTCGTCCTAAC 16899
Query 4029 ATGGGCGGCTTTGGCCTGAAACATCCTCCGCCTCAGATCCTGATCAAGAACACGCCTGTA 4088
||||| ||||||| |||||||| || || ||| ||| || || || || ||
Sbjct 16900 ATGGGAAGCTTTGGGTGCAAACATCCACCTCCGATGATTCTGCAGAAAAATACTCCAGTC 16959
Query 4089 CCTGCGGATCCTCCGACCACCTTCAACCAGTCAAAGC---TGAACTCTTTCATCACGCAA 4145
||||| || ||||| | |||||| | || || | || ||||| || | ||
Sbjct 16960 CCTGCAGAACCTCCTGCGGCCTTCACTGA---AACGCCTATTAAGTCTTTTATTAGTCAG 17016
Query 4146 TACAGCACCGGACAGGTCAGCGTGGAAATTGAATGGGAGCTGCAGAAGGAAAACAGCAAG 4205
|| ||| || ||||| | ||||||||||| ||||||| | ||| ||||||
Sbjct 17017 TATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCGAAAATCAGAATCCAGCAAA 17076
Query 4206 CGCTGGAACCCCGAGATCCAGTACAC 4231
|||||||| || |||||||| | |||
Sbjct 17077 CGCTGGAATCCAGAGATCCAATTCAC 17102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 13881317146680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |