Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_006263.1
Length=4682
Score E
Sequences producing significant alignments: (Bits) Value
seq401307 212 2e-51
>seq401307
Length=51916
Score = 212 bits (234), Expect = 2e-51
Identities = 266/364 (73%), Gaps = 1/364 (0%)
Strand=Plus/Plus
Query 1218 CAAGCGAAACACGCTGTGGCTGTTCGGACCTGCGACCACCGGCAAGACCAACATCGCGGA 1277
|||| | ||| | | ||| | | | |||||||||||||| ||||||| | ||||| |||
Sbjct 14054 CAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 14113
Query 1278 GGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCC 1337
|||||| |||| ||||||||| || ||||| || | |||||||| || |||||||| ||
Sbjct 14114 GGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTGCC 14173
Query 1338 GTTCAACGACTGCGTCGAAAAGATGATTATCTGGTGGGAAGAGGGCAAAATGACCGCCAA 1397
||||| ||||| | || ||||| | || |||||||| || || || ||||| ||
Sbjct 14174 TTTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAA 14233
Query 1398 GGTGGTGGAAACGGCTAAAGCGATTCTGGGAGGATCTCGGGTG-AGAGTGGACCAAAAAT 1456
| || || | |||||||| ||| ||| || | ||| | || || |||||||
Sbjct 14234 AATTGTAGAGTCTGCTAAAGCCATTTTGGTTGGGTTGGCTGTGCGGGGTTGATCAAAAAT 14293
Query 1457 GCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGTAACACCAACATGT 1516
| |||| ||| || | || ||||| ||||| || ||||||||||||| || | | ||
Sbjct 14294 GTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGT 14353
Query 1517 GTTATGTCATCGACGGGAACACGACTACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGA 1576
|| ||| | || ||||||| ||||| || || |||||| || |||||||| || |
Sbjct 14354 GTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTGGAGGAAAGAA 14413
Query 1577 TGTT 1580
||||
Sbjct 14414 TGTT 14417
Score = 104 bits (114), Expect = 7e-19
Identities = 307/468 (66%), Gaps = 13/468 (3%)
Strand=Plus/Plus
Query 2925 TCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGACAACGGAGTCGTTACCCGAACC 2984
||||| ||||| ||||| | ||||| ||||||| | || ||| || || ||
Sbjct 15706 TCCTCAGGAAACGGGCAT-GTGATTCTCAATGGCAAGGGAATCTCGTCACCACTCGTTCC 15764
Query 2985 ACTCGAACCTGGGTCCTGCCCAGCTACAACAACCACTTGTACAAGCGGATCCAAGGACCG 3044
|| |||| ||| | || ||| ||| ||||| | | ||||||| ||| ||||
Sbjct 15765 ACCAGAACTTGGATGCTCCCCTACTATGACAACAATCTCTACAAGCAGATTAAAGGC--- 15821
Query 3045 GGAGGAACCGACCCCAACAATAAATTCTTTGGATTCAGCACCCCCTGGGGGTACTTTGAC 3104
|| | | || ||| | ||| || | ||||||||| |||| ||| | |||
Sbjct 15822 ----GATGC--CTCCGACATGTGCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGAC 15874
Query 3105 TACAACCGATTCCACTGCCACTTCTCCCCCCGAGACTGGCAACGACTCATCAACAACAAC 3164
| |||| ||||||| ||||||| | ||||||||| || || |||||| ||||| ||
Sbjct 15875 TTCAACAGATTCCAGTGCCACTGGAGTCTCCGAGACTGTCAGCGGCTCATCCACAACTAC 15934
Query 3165 TGGGGCATCCGACCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAAGAAGTC 3224
|||||||||||||| || || | | | | | || ||||| || ||||| || |||
Sbjct 15935 TGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTC 15994
Query 3225 ACTGTCCAAGACTCCAACACCACCATCGCCAACAACCTCACCAGCACGGTCCAAGTCTTT 3284
| | || || | || || ||||| ||||| || || |||| | |||
Sbjct 15995 ATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATTTTT 16054
Query 3285 GCGGACAAGGACTACCAGCTGCCGTACGTCCTCGGATCGGCTACAGAGGGCACCTT-CCC 3343
|| || | ||||||||||| || || | ||| || || ||||| ||| |||
Sbjct 16055 GCAGATGACACATACCAGCTGCCCTATGTGATTGGAAATGCCACTGAGGGGTGCTTGCCC 16114
Query 3344 GCCGTTCCCAGCGGATATCTACACGATCCCGCAGTATGGTTACTGCAC 3391
|| ||||| | ||| | | | | | || ||||| | ||||||||
Sbjct 16115 GCTTTTCCC-GGTGATGTTTTTATGTTGCCTCAGTACTGGTACTGCAC 16161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14801854240620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |