Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq401307 212 2e-51 >seq401307 Length=51916 Score = 212 bits (234), Expect = 2e-51 Identities = 266/364 (73%), Gaps = 1/364 (0%) Strand=Plus/Plus Query 1218 CAAGCGAAACACGCTGTGGCTGTTCGGACCTGCGACCACCGGCAAGACCAACATCGCGGA 1277 |||| | ||| | | ||| | | | |||||||||||||| ||||||| | ||||| ||| Sbjct 14054 CAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 14113 Query 1278 GGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCC 1337 |||||| |||| ||||||||| || ||||| || | |||||||| || |||||||| || Sbjct 14114 GGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTGCC 14173 Query 1338 GTTCAACGACTGCGTCGAAAAGATGATTATCTGGTGGGAAGAGGGCAAAATGACCGCCAA 1397 ||||| ||||| | || ||||| | || |||||||| || || || ||||| || Sbjct 14174 TTTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAA 14233 Query 1398 GGTGGTGGAAACGGCTAAAGCGATTCTGGGAGGATCTCGGGTG-AGAGTGGACCAAAAAT 1456 | || || | |||||||| ||| ||| || | ||| | || || ||||||| Sbjct 14234 AATTGTAGAGTCTGCTAAAGCCATTTTGGTTGGGTTGGCTGTGCGGGGTTGATCAAAAAT 14293 Query 1457 GCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGTAACACCAACATGT 1516 | |||| ||| || | || ||||| ||||| || ||||||||||||| || | | || Sbjct 14294 GTAAAGGTTCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGT 14353 Query 1517 GTTATGTCATCGACGGGAACACGACTACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGA 1576 || ||| | || ||||||| ||||| || || |||||| || |||||||| || | Sbjct 14354 GTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTGGAGGAAAGAA 14413 Query 1577 TGTT 1580 |||| Sbjct 14414 TGTT 14417 Score = 104 bits (114), Expect = 7e-19 Identities = 307/468 (66%), Gaps = 13/468 (3%) Strand=Plus/Plus Query 2925 TCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGACAACGGAGTCGTTACCCGAACC 2984 ||||| ||||| ||||| | ||||| ||||||| | || ||| || || || Sbjct 15706 TCCTCAGGAAACGGGCAT-GTGATTCTCAATGGCAAGGGAATCTCGTCACCACTCGTTCC 15764 Query 2985 ACTCGAACCTGGGTCCTGCCCAGCTACAACAACCACTTGTACAAGCGGATCCAAGGACCG 3044 || |||| ||| | || ||| ||| ||||| | | ||||||| ||| |||| Sbjct 15765 ACCAGAACTTGGATGCTCCCCTACTATGACAACAATCTCTACAAGCAGATTAAAGGC--- 15821 Query 3045 GGAGGAACCGACCCCAACAATAAATTCTTTGGATTCAGCACCCCCTGGGGGTACTTTGAC 3104 || | | || ||| | ||| || | ||||||||| |||| ||| | ||| Sbjct 15822 ----GATGC--CTCCGACATGTGCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGAC 15874 Query 3105 TACAACCGATTCCACTGCCACTTCTCCCCCCGAGACTGGCAACGACTCATCAACAACAAC 3164 | |||| ||||||| ||||||| | ||||||||| || || |||||| ||||| || Sbjct 15875 TTCAACAGATTCCAGTGCCACTGGAGTCTCCGAGACTGTCAGCGGCTCATCCACAACTAC 15934 Query 3165 TGGGGCATCCGACCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAAGAAGTC 3224 |||||||||||||| || || | | | | | || ||||| || ||||| || ||| Sbjct 15935 TGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTC 15994 Query 3225 ACTGTCCAAGACTCCAACACCACCATCGCCAACAACCTCACCAGCACGGTCCAAGTCTTT 3284 | | || || | || || ||||| ||||| || || |||| | ||| Sbjct 15995 ATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATTTTT 16054 Query 3285 GCGGACAAGGACTACCAGCTGCCGTACGTCCTCGGATCGGCTACAGAGGGCACCTT-CCC 3343 || || | ||||||||||| || || | ||| || || ||||| ||| ||| Sbjct 16055 GCAGATGACACATACCAGCTGCCCTATGTGATTGGAAATGCCACTGAGGGGTGCTTGCCC 16114 Query 3344 GCCGTTCCCAGCGGATATCTACACGATCCCGCAGTATGGTTACTGCAC 3391 || ||||| | ||| | | | | | || ||||| | |||||||| Sbjct 16115 GCTTTTCCC-GGTGATGTTTTTATGTTGCCTCAGTACTGGTACTGCAC 16161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14801854240620