Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq401307 161 3e-36 >seq401307 Length=51916 Score = 161 bits (178), Expect = 3e-36 Identities = 234/321 (73%), Gaps = 7/321 (2%) Strand=Plus/Plus Query 2836 TACTTTGGTTACAGCACGCCTTGGGGATACTTCGATTTCAATCGATTCCACTGCCACTTT 2895 ||||| ||||||||||| ||| ||| ||| |||| ||||| ||||||| ||||||| Sbjct 15840 TACTTGGGTTACAGCACCCCT-GGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGG 15898 Query 2896 TCTCCCAGGGACTGGCAGCGGCTCATCAACAACCACTGGGGCATCCGCCCCAAGCGGCTC 2955 || | | ||||| |||||||||||| ||||| ||||||||||||| || ||| | | Sbjct 15899 AGTCTCCGAGACTGTCAGCGGCTCATCCACAACTACTGGGGCATCCGACCAAAG-GCTTG 15957 Query 2956 CA-CTTTAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGACGACCGACGGCACCACGAC 3014 | | || | |||||||| || || |||||||||| | | | | ||||| | ||| Sbjct 15958 TAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGAC 16017 Query 3015 CATCGCCAACAACCTCACCAGCACCATACAGGTCTTTGCGGA-CACGGAGTACCAGCTCC 3073 || ||||| ||||| || ||||| ||| | ||||| || || | |||||||| | Sbjct 16018 AATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACA-TACCAGCTGC 16076 Query 3074 CGTACGTGCTCGGCAACGCCCACGAGGGCTGCCTG-CCGCCGTTCCCGGCGGACGTCTTC 3132 | || ||| | || || ||| ||||| ||| || |||| ||||||| || || || Sbjct 16077 CCTATGTGATTGGAAATGCCACTGAGGGGTGCTTGCCCGCTTTTCCCGG-TGATGTTTTT 16135 Query 3133 ATGCTGCCGCAGTACGCGTAC 3153 ||| |||| |||||| |||| Sbjct 16136 ATGTTGCCTCAGTACTGGTAC 16156 Score = 116 bits (128), Expect = 1e-22 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 1153 CAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGAACCTCGCCGA 1212 |||| ||||| || ||||| ||| | | || || || ||| ||||||| | | ||| || Sbjct 14054 CAAGGGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 14113 Query 1213 GGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAGAACTTCCC 1272 ||| ||| || | ||||| || || ||||| | |||||||| || |||||||| || Sbjct 14114 GGCTATCGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTGCC 14173 Query 1273 CTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGATGAC 1326 ||||| ||||| | || ||||| | || ||||||||||| || |||||||| Sbjct 14174 TTTCAATGACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAAAGATGAC 14227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13540495454460