Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_027429.1
Length=4590
Score E
Sequences producing significant alignments: (Bits) Value
seq401307 100 8e-18
>seq401307
Length=51916
Score = 100 bits (110), Expect = 8e-18
Identities = 263/399 (66%), Gaps = 7/399 (2%)
Strand=Plus/Plus
Query 1350 CCATCTGGCTCTACGGACCAGCTACCACCGGAAAGACTATTATAGCGCAAGCTATAGCCC 1409
|||||||| ||||| |||| || |||||| | ||||| | || | | | ||||| ||||
Sbjct 14065 CCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATCGCCC 14124
Query 1410 ACGGTGCTGTCCTCTTT---GGAGGAGTCAATTGGACTAATGAAAACTTTCCCTTTTGTA 1466
||||||| | ||| || | | || ||||||||||| ||||| || || |
Sbjct 14125 ---GTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTGCCTTTCAATG 14181
Query 1467 ATTGTCCTGGTAAACTGTTGATATGGTGGGAAGAGGGTAAAATGACACAAAAGATGGTCG 1526
| || | | | | || |||| |||||||| || || || ||||| || || || |
Sbjct 14182 ACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAAAATTGTAG 14241
Query 1527 AAACCGCCAAATGTATATTAGGCGGTGCTGTTGTACCTG-TGGATATCAAAGGCAAAATG 1585
| | || ||| || || | || | ||| | | | ||| ||| | |||
Sbjct 14242 AGTCTGCTAAAGCCATTTTGGTTGGGTTGGCTGTGCGGGGTTGATCAAAAATGTAAAGGT 14301
Query 1586 GCTGAACTGTGTGAAACCACCCCTGTCATTATTACCAGTAATACCAACATGTGTCAGGTC 1645
| | | |||| | || ||||| |||||||||||||||| | | |||| ||
Sbjct 14302 TCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGTGTGCTGTG 14361
Query 1646 TTTGATGGTAACAGTAGCAGTTTTGAACATACCGAACCCTTAGAAGAAAGAATGTTTATG 1705
||||||| ||||| | | || ||||||| | ||| || || ||||||||||| |
Sbjct 14362 GTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTGGAGGAAAGAATGTTCCTT 14421
Query 1706 TTTAGGTTGAATAAGAAACTGGAACCTGATTTTGGAAAA 1744
|||||||| | ||||| | ||||||||| |||
Sbjct 14422 TTTAGGTTCACAGTAAAACTCAGGCATGATTTTGGGAAA 14460
Score = 98.7 bits (108), Expect = 3e-17
Identities = 208/308 (68%), Gaps = 2/308 (1%)
Strand=Plus/Plus
Query 2895 CCCCTGGGCCTACTTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGAGACTGGCA 2954
||||||||||||| | ||||| ||| ||||||| ||||||| | ||||||||| ||
Sbjct 15856 CCCCTGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCTCCGAGACTGTCA 15915
Query 2955 AAGACTCATTAACAACCATACCGGAATACGACCAGTCGGACTCAAATTCAAGCTGTTCAA 3014
| ||||| ||||| | || || |||||| | | | |||| | |||||
Sbjct 15916 GCGGCTCATCCACAACTACTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAA 15975
Query 3015 CATCCAGGTCAAGGAAATCACAGTACAAGATTCGACCAAAACGATCGCCAACAATCTCAC 3074
||| || || ||||| ||| | || || || || || ||||| || || ||
Sbjct 15976 CATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 16035
Query 3075 CAGCACCGTACAGGTCTTTGCGGA-CACGGAGCACCAGCTCCCGTACGTATTAGGAAATG 3133
||| | ||| | ||||| || || | ||||||| || || || | |||||||
Sbjct 16036 GTCAACCATCCAGATTTTTGCAGATGACACA-TACCAGCTGCCCTATGTGATTGGAAATG 16094
Query 3134 CCACGCAGGGCACGTTTCCTCCCTTTCCGGCTGAAGTCTTTCAGTTGCCTCAGTACGGCT 3193
|||| |||| || || | ||||| | ||| || ||| ||||||||||||| | |
Sbjct 16095 CCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGT 16154
Query 3194 ACTGTACC 3201
|||| |||
Sbjct 16155 ACTGCACC 16162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14508811290300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |