Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_027429.1 Length=4590 Score E Sequences producing significant alignments: (Bits) Value seq401307 100 8e-18 >seq401307 Length=51916 Score = 100 bits (110), Expect = 8e-18 Identities = 263/399 (66%), Gaps = 7/399 (2%) Strand=Plus/Plus Query 1350 CCATCTGGCTCTACGGACCAGCTACCACCGGAAAGACTATTATAGCGCAAGCTATAGCCC 1409 |||||||| ||||| |||| || |||||| | ||||| | || | | | ||||| |||| Sbjct 14065 CCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATCGCCC 14124 Query 1410 ACGGTGCTGTCCTCTTT---GGAGGAGTCAATTGGACTAATGAAAACTTTCCCTTTTGTA 1466 ||||||| | ||| || | | || ||||||||||| ||||| || || | Sbjct 14125 ---GTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTGCCTTTCAATG 14181 Query 1467 ATTGTCCTGGTAAACTGTTGATATGGTGGGAAGAGGGTAAAATGACACAAAAGATGGTCG 1526 | || | | | | || |||| |||||||| || || || ||||| || || || | Sbjct 14182 ACTGGGCAGATTAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAAAATTGTAG 14241 Query 1527 AAACCGCCAAATGTATATTAGGCGGTGCTGTTGTACCTG-TGGATATCAAAGGCAAAATG 1585 | | || ||| || || | || | ||| | | | ||| ||| | ||| Sbjct 14242 AGTCTGCTAAAGCCATTTTGGTTGGGTTGGCTGTGCGGGGTTGATCAAAAATGTAAAGGT 14301 Query 1586 GCTGAACTGTGTGAAACCACCCCTGTCATTATTACCAGTAATACCAACATGTGTCAGGTC 1645 | | | |||| | || ||||| |||||||||||||||| | | |||| || Sbjct 14302 TCCGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGTGTGCTGTG 14361 Query 1646 TTTGATGGTAACAGTAGCAGTTTTGAACATACCGAACCCTTAGAAGAAAGAATGTTTATG 1705 ||||||| ||||| | | || ||||||| | ||| || || ||||||||||| | Sbjct 14362 GTTGATGGGAACAGCACTACCTTGGAACATAAGGGACCTTTGGAGGAAAGAATGTTCCTT 14421 Query 1706 TTTAGGTTGAATAAGAAACTGGAACCTGATTTTGGAAAA 1744 |||||||| | ||||| | ||||||||| ||| Sbjct 14422 TTTAGGTTCACAGTAAAACTCAGGCATGATTTTGGGAAA 14460 Score = 98.7 bits (108), Expect = 3e-17 Identities = 208/308 (68%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 2895 CCCCTGGGCCTACTTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGAGACTGGCA 2954 ||||||||||||| | ||||| ||| ||||||| ||||||| | ||||||||| || Sbjct 15856 CCCCTGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCTCCGAGACTGTCA 15915 Query 2955 AAGACTCATTAACAACCATACCGGAATACGACCAGTCGGACTCAAATTCAAGCTGTTCAA 3014 | ||||| ||||| | || || |||||| | | | |||| | ||||| Sbjct 15916 GCGGCTCATCCACAACTACTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAA 15975 Query 3015 CATCCAGGTCAAGGAAATCACAGTACAAGATTCGACCAAAACGATCGCCAACAATCTCAC 3074 ||| || || ||||| ||| | || || || || || ||||| || || || Sbjct 15976 CATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 16035 Query 3075 CAGCACCGTACAGGTCTTTGCGGA-CACGGAGCACCAGCTCCCGTACGTATTAGGAAATG 3133 ||| | ||| | ||||| || || | ||||||| || || || | ||||||| Sbjct 16036 GTCAACCATCCAGATTTTTGCAGATGACACA-TACCAGCTGCCCTATGTGATTGGAAATG 16094 Query 3134 CCACGCAGGGCACGTTTCCTCCCTTTCCGGCTGAAGTCTTTCAGTTGCCTCAGTACGGCT 3193 |||| |||| || || | ||||| | ||| || ||| ||||||||||||| | | Sbjct 16095 CCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGT 16154 Query 3194 ACTGTACC 3201 |||| ||| Sbjct 16155 ACTGCACC 16162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14508811290300