Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_001422.1 Length=5386 Score E Sequences producing significant alignments: (Bits) Value seq1012 969 0.0 >seq1012 Length=1223 Score = 969 bits (1074), Expect = 0.0 Identities = 936/1202 (78%), Gaps = 0/1202 (0%) Strand=Plus/Minus Query 1120 CTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGC 1179 |||||||| | ||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1222 CTCCTTCGCGCTGGCCGCCGTTGGCGCTCTCCGTCTTTCTCCCTTGCGTCGTGGCCTTGC 1163 Query 1180 TATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGA 1239 | ||| |||| |||| | | ||||| |||||| |||||||| ||||| ||||| ||||| Sbjct 1162 TCTTGCCTCTCCTGTCGCCCTTTTTCCTTTTTCTGTCCCTCCTCGTCCCGTTTCTGGTGC 1103 Query 1240 ACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACAC 1299 | |||| || |||| || || ||||||| |||| ||||||||||| ||||| | | Sbjct 1102 CCCGTGGCTTCCGTTCCTGCCGGCTGGTGTTCCTGCCCCTCCTCTCCCGCCTGTTCCCCC 1043 Query 1300 TACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAAT 1359 | |||||| | ||| || |||||||||||||||| || || ||||| | || | | Sbjct 1042 TGCTGGTTCTCTTGCCCCTGCCGCTTTTCTTGGCCCGCTTCCCCCTGCTCCCCCTCCCCT 983 Query 1360 CCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTG 1419 |||| || |||||||| ||||| |||| | ||| | | || |||| |||||||| Sbjct 982 CCCTCCGCCTTTGTTTCCGGGTTCTTTGCCTCTCTCTCCCCCCTCTTTTCCCGCGCCGTG 923 Query 1420 GATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGG 1479 | |||||| |||| ||| |||| |||| || |||| || | || |||||||| ||| Sbjct 922 GCTGCCTGCCCGTCCCGCGGCTCCCCCTCCTGCGCTTCCTCCCGCTGCTGCTCGTTCTGG 863 Query 1480 TTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCT 1539 |||||||||||||| |||| | ||||| |||||||||||||||||| | ||| ||| Sbjct 862 TTTCCGTTGCTGCCCTCTCCCCCCCCTTTGGCCTGCTCCGCTTCCTCCTGCGCCTGCGCT 803 Query 1540 TTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTA 1599 |||||||| || || ||||| || | ||| ||| | || ||||||||| ||||||| Sbjct 802 TTCTCGCCCCCTGCCGCCTTCTCCCCCCTCTCTTGCCCTTCTGGGTCTGCCCGCTGCTTC 743 Query 1600 TGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTAT 1659 |||| ||||| | ||| || | |||| || |||| ||| ||||| || || |||| | Sbjct 742 TGCTCCTTTGCCTCCTGCCCCCGCCCGTGCTTCCTTCCTGCCGCGTTCCCCTGCTGTTCT 683 Query 1660 TTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCG 1719 |||||| ||||| ||| |||||| || ||||| | ||||||||| |||||| |||| Sbjct 682 TTCTTCCTTTGGCGGTCCCCCCTCTTCTGCCGCTGCCCCCCGTCCTTTCCTTGTCCTGCG 623 Query 1720 CTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCA 1779 |||| ||||||||| ||||||| || ||||| ||| ||| || ||||||| |||| Sbjct 622 CTCTCCTCTCTGGGCCTCTGGCTCTGCTGTTGCTGGCCCTGCCCCCCCGTCGTTCGGCCC 563 Query 1780 GTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGA 1839 ||||||||||||||||| | | ||| | | |||||||||||||||||||||||||| Sbjct 562 GTTTTCTGGTCGTGTTCCCCCGCCCTCTCCCCCTTCTGTGCCGCGTTTCTTTGTTCCTGC 503 Query 1840 GCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGAT 1899 || |||| || ||||| |||||||||||||||||||||||||| ||||| || | | | Sbjct 502 GCCTGGCCCTCTGTTTCCTCTTGCGCTTGTTCGTTTTCCGCCTCCTGCGCCTCCCGCGCT 443 Query 1900 TCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTT 1959 || || |||| |||| ||||||||| ||| | ||| | ||||||||| ||||||||| Sbjct 442 TCCGTCCCTTCCCGCTCCCGGTGCTTTGCCTTCTCCCGCTCTTGCTGGCGCCCCTGTTTT 383 Query 1960 GTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTC 2019 || |||| |||||||||||||| ||||| || || ||||||||||||||||| ||| Sbjct 382 GTCTGGCCCCTTGCCGCCGCGTGCCCTTTCTCTGCCGGCTGTTTTCCGTTCTGGTGCTTC 323 Query 2020 GTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTC 2079 |||| | |||| | |||||| ||||| ||||| ||||| ||||||||||| |||||| Sbjct 322 GTCTCCGCCGTTTCCGCTTGCTGCGGGTCCGTGGTCTCGTTCTGCGCCTTCGTCTGTTTC 263 Query 2080 TCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTT 2139 |||||||| || |||||||| |||||||| ||| ||| || ||||||||||||| ||| Sbjct 262 TCCTGCTTCTCCCCTTCTTGCCGGCTTCCCCTTCCTTCCGGCCCCGCCTTCTGGTGCTTT 203 Query 2140 GCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTT 2199 || | ||||| ||| |||||| || || || || || |||||||| |||||||| ||| Sbjct 202 GCCCGCCCGCGTCCTTCTTCGCCCCCCTGCTTCTGCCCCGTGTTTCCCGTCCGTTCCGTT 143 Query 2200 GTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCAC 2259 ||||| |||| | ||| |||| ||| |||| |||||| |||| ||||||| || | Sbjct 142 GTTGCCGTGGCCTCGTCCGGTTCCCTTTCCTGTGCCCGTTTCTCGCCCTCTGCCGCCCCC 83 Query 2260 TCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAACGCCGAAGCG 2319 ||||| ||| || || ||||||| | || || ||||| |||| || |||| |||| Sbjct 82 TCGCGCTTCCCTCCTGCCTTCGTGCTCCCCGAATGCGTGTGCGGTTCTACAGCCGCAGCG 23 Query 2320 GT 2321 || Sbjct 22 GT 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17099146800165