Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_021862.1
Length=8576
Score E
Sequences producing significant alignments: (Bits) Value
seq326935 161 5e-36
>seq326935
Length=13877
Score = 161 bits (178), Expect = 5e-36
Identities = 424/626 (68%), Gaps = 22/626 (4%)
Strand=Plus/Plus
Query 6808 CTCTTCGCGCTTGTCGATGCCCTGATAGCCGGCATCGCCGAACACGTCGGCCTCCTTGCC 6867
|||||||||||| |||| || |||||| |||||| || | || || ||| ||
Sbjct 1766 CTCTTCGCGCTTCTCGACACCGGTATAGCCTGCATCGGCGCAGACCACGTTCTCAGCACC 1825
Query 6868 ATGCACCAATGCGTTGCGCTGGCGTCACGTCGTTGACGTTGGCGGCCGTGCCCACTACGG 6927
|| | || | || | ||| || | ||| |||||||| || ||| |||| |||
Sbjct 1826 GTGTAGCAGTTTGTCGACTTGG-GTTATGTCCGCCACGTTGGCCGCAGTGACCACCACGC 1884
Query 6928 TGTGCACCAGCCCCGAGTCCGCATCCACACCAATGTGCGCTTTCATGCCGAAATGCCACT 6987
||||||||||||||||||| | | ||||||||||||||||| |||||| | |||
Sbjct 1885 TGTGCACCAGCCCCGAGTCATCGTAGACACCAATGTGCGCTTTGGCGCCGAAGTAATACT 1944
Query 6988 GGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCACGCTTGCCGCTGCCATTCTTGGTCG 7047
|||| || ||||| || |||||||| || ||||| || || | | ||||||||||
Sbjct 1945 GGTTGCCCTTCTTCGTTTGGTGCATTTCCGGGTCGCGTTTACTGTCCTTGTTCTTGGTCG 2004
Query 7048 AACTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTG-CACGTCTTTGAG-CAGGTAGC 7105
|| ||||||| |||||||| ||| ||||| | ||| | ||| | | |||| |
Sbjct 2005 AAGTGGGCGCATGAATCAGCGTGGCATCGACGATGGTGCCTTGTCGCAGTGACAGGCCAC 2064
Query 7106 CCTTCGCACTGAGTTGCGCGTTGACGGTC-TGCAGA-AATTGC-TCGGCTAACTGGTGTC 7162
| |||| | || | || | |||| || || || |||| | ||| |||| ||||
Sbjct 2065 GC-TCGCCCAGA-TAGC-CATTGA---TCACGCCGAGAATTCCAGTGGCCAACTCGTGTT 2118
Query 7163 GCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGTCCGGCAGTCGGCTTATGCCTC 7222
||||||| | | || ||| |||||| || ||| || | || ||| | ||
Sbjct 2119 TTTCCAGCAGGCGACGGAAGTTGAGAATGGTGGTTTCGTCTGGGATTC-GCTCCAGGCT- 2176
Query 7223 CCAGCCCCGCGAATTGCCGATACAACGGCACGTCGTACAGCGCCTCTTCCATCGCCACGT 7282
||| || | || || || | | || | |||||||||||||||||||||||| |
Sbjct 2177 -CAGGCCGGAAAACTGGCGCAAGATCGTCGTCTCGTACAGCGCCTCTTCCATCGCCGGAT 2235
Query 7283 CCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGCAGCATCG-TTTCGACTGGAAAC 7341
| | || ||||| | ||||| | || | |||||||||| || || ||| ||
Sbjct 2236 CACTGTAACCAAACCAGTTCTGCATGAGATGAACCCGCAGCATCGCCATCAAC-GGATAC 2294
Query 7342 GGCTTCCGAC--CCGTCGCCTTGACCGGCGCATGCGGCGCTATCAACGCCAAAAAACGCC 7399
| | |||| || ||||| | ||| ||| || | |||| |||| |||| ||
Sbjct 2295 GCCGGACGACCGCCTTCGCCCT--TCGGGTAATGGGGTTCGATCAGAGCCATCAAAC-CC 2351
Query 7400 TGCCACGGCACCACACGTTCCATCTC 7425
| ||| ||||| || || ||||||||
Sbjct 2352 TTCCAAGGCACGACCCGATCCATCTC 2377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 26378468178160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |