Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq326935 161 5e-36 >seq326935 Length=13877 Score = 161 bits (178), Expect = 5e-36 Identities = 424/626 (68%), Gaps = 22/626 (4%) Strand=Plus/Plus Query 6808 CTCTTCGCGCTTGTCGATGCCCTGATAGCCGGCATCGCCGAACACGTCGGCCTCCTTGCC 6867 |||||||||||| |||| || |||||| |||||| || | || || ||| || Sbjct 1766 CTCTTCGCGCTTCTCGACACCGGTATAGCCTGCATCGGCGCAGACCACGTTCTCAGCACC 1825 Query 6868 ATGCACCAATGCGTTGCGCTGGCGTCACGTCGTTGACGTTGGCGGCCGTGCCCACTACGG 6927 || | || | || | ||| || | ||| |||||||| || ||| |||| ||| Sbjct 1826 GTGTAGCAGTTTGTCGACTTGG-GTTATGTCCGCCACGTTGGCCGCAGTGACCACCACGC 1884 Query 6928 TGTGCACCAGCCCCGAGTCCGCATCCACACCAATGTGCGCTTTCATGCCGAAATGCCACT 6987 ||||||||||||||||||| | | ||||||||||||||||| |||||| | ||| Sbjct 1885 TGTGCACCAGCCCCGAGTCATCGTAGACACCAATGTGCGCTTTGGCGCCGAAGTAATACT 1944 Query 6988 GGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCACGCTTGCCGCTGCCATTCTTGGTCG 7047 |||| || ||||| || |||||||| || ||||| || || | | |||||||||| Sbjct 1945 GGTTGCCCTTCTTCGTTTGGTGCATTTCCGGGTCGCGTTTACTGTCCTTGTTCTTGGTCG 2004 Query 7048 AACTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTG-CACGTCTTTGAG-CAGGTAGC 7105 || ||||||| |||||||| ||| ||||| | ||| | ||| | | |||| | Sbjct 2005 AAGTGGGCGCATGAATCAGCGTGGCATCGACGATGGTGCCTTGTCGCAGTGACAGGCCAC 2064 Query 7106 CCTTCGCACTGAGTTGCGCGTTGACGGTC-TGCAGA-AATTGC-TCGGCTAACTGGTGTC 7162 | |||| | || | || | |||| || || || |||| | ||| |||| |||| Sbjct 2065 GC-TCGCCCAGA-TAGC-CATTGA---TCACGCCGAGAATTCCAGTGGCCAACTCGTGTT 2118 Query 7163 GCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGTCCGGCAGTCGGCTTATGCCTC 7222 ||||||| | | || ||| |||||| || ||| || | || ||| | || Sbjct 2119 TTTCCAGCAGGCGACGGAAGTTGAGAATGGTGGTTTCGTCTGGGATTC-GCTCCAGGCT- 2176 Query 7223 CCAGCCCCGCGAATTGCCGATACAACGGCACGTCGTACAGCGCCTCTTCCATCGCCACGT 7282 ||| || | || || || | | || | |||||||||||||||||||||||| | Sbjct 2177 -CAGGCCGGAAAACTGGCGCAAGATCGTCGTCTCGTACAGCGCCTCTTCCATCGCCGGAT 2235 Query 7283 CCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGCAGCATCG-TTTCGACTGGAAAC 7341 | | || ||||| | ||||| | || | |||||||||| || || ||| || Sbjct 2236 CACTGTAACCAAACCAGTTCTGCATGAGATGAACCCGCAGCATCGCCATCAAC-GGATAC 2294 Query 7342 GGCTTCCGAC--CCGTCGCCTTGACCGGCGCATGCGGCGCTATCAACGCCAAAAAACGCC 7399 | | |||| || ||||| | ||| ||| || | |||| |||| |||| || Sbjct 2295 GCCGGACGACCGCCTTCGCCCT--TCGGGTAATGGGGTTCGATCAGAGCCATCAAAC-CC 2351 Query 7400 TGCCACGGCACCACACGTTCCATCTC 7425 | ||| ||||| || || |||||||| Sbjct 2352 TTCCAAGGCACGACCCGATCCATCTC 2377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26378468178160