Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq55 152 2e-33 >seq55 Length=16538760 Score = 152 bits (168), Expect = 2e-33 Identities = 226/318 (71%), Gaps = 3/318 (1%) Strand=Plus/Plus Query 1268 TCTGGGATGGGCCACGAAAAAGTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGC 1327 ||||| ||||| | || | |||| || | |||||| |||| ||| | | ||||| Sbjct 15365911 TCTGG--TGGGCGAGGAGAGCGTTCAGCGAAAGGAACGCCATTTGGTTCTACCATCCTGC 15365968 Query 1328 AACTACCGGGAAGACCAACATCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTG 1387 ||| || || || || |||||| | ||||| || ||||| ||||||||||||| || || Sbjct 15365969 AACCACGGGAAACACAAACATCACAGAGGCAATTGCCCATGCTGTGCCCTTCTATGGCTG 15366028 Query 1388 CGTAAACTGGACCAATGAGAACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTG 1447 || |||||||| ||||| |||||| | || || |||||||| ||||| ||| | || || Sbjct 15366029 TGTTAACTGGACTAATGAAAACTTT-CATTTAATGACTGTGTGGACAAAATGATAATTTG 15366087 Query 1448 GTGGGAGGAGGGGAAGATGACCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGG 1507 |||||| ||||| || ||||| || || || ||||| || ||| | ||| | ||||| Sbjct 15366088 GTGGGAAGAGGGAAAAATGACTAAAAATGTTGTTGAGTCTGCAAAACCAATTTTGGGAGG 15366147 Query 1508 AAGCAAGGTGCGCGTGGACCAGAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGT 1567 ||| | | | || | |||||| ||| || | || || || || ||||| || Sbjct 15366148 GTCTGCGGTTCACATTGAGCGGAAATGTAAGGGATCTGTACAAATGGAACCCACTCCTGT 15366207 Query 1568 GATCGTCACCTCCAACAC 1585 | ||||| ||||| Sbjct 15366208 TGTAATCACCAGTAACAC 15366225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14860298239020