Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_001401.2
Length=4679
Score E
Sequences producing significant alignments: (Bits) Value
seq55 152 2e-33
>seq55
Length=16538760
Score = 152 bits (168), Expect = 2e-33
Identities = 226/318 (71%), Gaps = 3/318 (1%)
Strand=Plus/Plus
Query 1268 TCTGGGATGGGCCACGAAAAAGTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGC 1327
||||| ||||| | || | |||| || | |||||| |||| ||| | | |||||
Sbjct 15365911 TCTGG--TGGGCGAGGAGAGCGTTCAGCGAAAGGAACGCCATTTGGTTCTACCATCCTGC 15365968
Query 1328 AACTACCGGGAAGACCAACATCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTG 1387
||| || || || || |||||| | ||||| || ||||| ||||||||||||| || ||
Sbjct 15365969 AACCACGGGAAACACAAACATCACAGAGGCAATTGCCCATGCTGTGCCCTTCTATGGCTG 15366028
Query 1388 CGTAAACTGGACCAATGAGAACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTG 1447
|| |||||||| ||||| |||||| | || || |||||||| ||||| ||| | || ||
Sbjct 15366029 TGTTAACTGGACTAATGAAAACTTT-CATTTAATGACTGTGTGGACAAAATGATAATTTG 15366087
Query 1448 GTGGGAGGAGGGGAAGATGACCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGG 1507
|||||| ||||| || ||||| || || || ||||| || ||| | ||| | |||||
Sbjct 15366088 GTGGGAAGAGGGAAAAATGACTAAAAATGTTGTTGAGTCTGCAAAACCAATTTTGGGAGG 15366147
Query 1508 AAGCAAGGTGCGCGTGGACCAGAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGT 1567
||| | | | || | |||||| ||| || | || || || || ||||| ||
Sbjct 15366148 GTCTGCGGTTCACATTGAGCGGAAATGTAAGGGATCTGTACAAATGGAACCCACTCCTGT 15366207
Query 1568 GATCGTCACCTCCAACAC 1585
| ||||| |||||
Sbjct 15366208 TGTAATCACCAGTAACAC 15366225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14860298239020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |