Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq55 367 4e-98 >seq55 Length=16538760 Score = 367 bits (406), Expect = 4e-98 Identities = 479/656 (73%), Gaps = 9/656 (1%) Strand=Plus/Plus Query 1224 GTTGATTGGCTCATTGAAATGGGGATAACATCTGAGAAGCAATGGCTCACTGAGAACCGA 1283 ||||||||||| | || | || || ||||||||| ||| ||||| | |||| | Sbjct 15365646 GTTGATTGGCTAGTGGACAACGGCATTACATCTGAGCGGCAGTGGCTT--TTAGAAGACA 15365703 Query 1284 GAGAGCTACAGAAGCTTTCAAGCAACTTCTTCAAATAATAGACAAGTGAAAGCTGCACTG 1343 | | | | | ||||||| || | || | | | | || || || || || || Sbjct 15365704 AAAAA-TCCCGCAGCTTTCGGGCCAGCTCCACGACTTCTCCCCATGTAAAGGCCGCCCTA 15365762 Query 1344 GAAAATGCCCGTGCTGAAATGTTATTGACAAAGACTGCAACTGATTACCTGATAGGAAAA 1403 ||||||||| | || || ||| | ||||| || | || || ||||||||||| ||| Sbjct 15365763 GAAAATGCCTGAGCCGAGATGCTTTTGACCAAATCCGCGGAGGACTACCTGATAGGCAAA 15365822 Query 1404 GACCCTGTCCTGGATATAACTAAGAATAGGGTCTATCAAATTCTGAAAATGAATAACTAC 1463 || || || || || || || | ||| || | | || |||| | ||| Sbjct 15365823 CTGCCGGTGGGAGACATGACAAAAAACAAGGTGCTCCAGCTCTTTCAAGTGAACCAGTAC 15365882 Query 1464 AACCCTCA-ATACATAGGAAGTATCCTGTGCGGCTGGGTGAAGAGAGAGTTCAACAAAAG 1522 |||||| || | || | |||||| | | |||| || ||||| ||||| | |||| Sbjct 15365883 GACCCTCTGATGCC-AGCCTGGATCCTGGTCTGGTGGGCGAGGAGAGCGTTCAGCGAAAG 15365941 Query 1523 AAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACATTGCAGAAGCTAT 1582 |||||||| ||| ||||| ||||| ||||| || || || ||||| |||| || || Sbjct 15365942 GAACGCCATTTGGTTCTACCATCCTGCAACCACGGGAAACACAAACATCACAGAGGCAAT 15366001 Query 1583 TGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTAA 1642 |||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| || Sbjct 15366002 TGCCCATGCTGTGCCCTTCTATGGCTGTGTTAACTGGACTAATGAAAACTTTCATTT-AA 15366060 Query 1643 TGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGACTAATAAGGTTGT 1702 ||| ||||| || |||||| | ||||||||||| ||||||||||||||||| || ||||| Sbjct 15366061 TGACTGTGTGGACAAAATGATAATTTGGTGGGAAGAGGGAAAAATGACTAAAAATGTTGT 15366120 Query 1703 TGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGTCCGGGTAGACCAGAAATGTAAAGG 1762 ||| ||||||||| ||||||||||||||||||| || | | || | ||||||||| || Sbjct 15366121 TGAGTCTGCAAAACCAATTTTGGGAGGGTCTGCGGTTCACATTGAGCGGAAATGTAAGGG 15366180 Query 1763 ATCTGTTTGTATTGAACCTACTCCTGTAATTATTACTAGTAATACTGATATGTGTATGAT 1822 |||||| || ||||| |||||||| | || || ||||| |||||||| ||| | Sbjct 15366181 ATCTGTACAAATGGAACCCACTCCTGTTGTAATCACCAGTAACACTGATATATGT---CT 15366237 Query 1823 TGTTGATGGCAACTCTACTACAATGGAACATAGAATACCATTAGAGGAGCGTATGT 1878 ||||||||| || |||||| | ||||| | ||||||||| ||||| |||| Sbjct 15366238 TGTTGATGGTAATGGTACTACTTTTGAACACAAGGAACCATTAGACGAGCGAATGT 15366293 Score = 150 bits (166), Expect = 6e-33 Identities = 305/445 (69%), Gaps = 11/445 (2%) Strand=Plus/Plus Query 2393 GCTTGATGATGCTGAAAATGAACAATAAAGATGACTCAAAGC-AGATATGTCTACTTTTT 2451 || ||||||| ||| |||||||||| || | | ||| || |||| || ||||| Sbjct 15366895 GCCTGATGATAATGACTTGGAACAATAAA-ATAAGTAAAACATAGCTATGGCTGGTTTTT 15366953 Query 2452 TAGATTCTTTTGAAGAGTGGTATGAGACTGCAGCCGCCTCGTGGCGGAATCTGAAAGCTG 2511 ||| | | |||||||| ||||| |||| ||||| || | || || || ||| ||| Sbjct 15366954 TAGGTACCTTTGAAGATTGGTACGAGAAAGCAGCAGCAACCCGGAAAAACCTTAAACCTG 15367013 Query 2512 GAGCCCCTCAGCCAAAACCAAAC--CAGCAGTCT-CAGTCTGTGTCTCCAGACAGAGAAC 2568 || ||||| |||||||||||| |||||| || ||| |||||||| | ||| | Sbjct 15367014 GACCCCCTGCCCCAAAACCAAACAGCAGCAGCCTTCAG-CTGTGTCTGAACCTCGAGGAG 15367072 Query 2569 CCGAACGAAAAGATAATAATCGGGGCTTTGTACTTCCTGGCTATAAGTATCTTGGGCCTG 2628 | | |||| | | |||| |||| || |||||||||||||| ||||| ||| Sbjct 15367073 GAGTTC---AAGACACTGCAAGGGGTCTTGTCCTCCCTGGCTATAAGTACCTTGGTCCTT 15367129 Query 2629 GTAACGGCCTGGATAAAGGCCCACCTGTCAATAAGGCGGACAGCGTCGCGCTTGAACACG 2688 ||||| ||| ||||| || || || ||||||||| | |||| | || ||| Sbjct 15367130 TTAACGACCTTGATAACGGTCCTCCGGTCAATAAGACAGACAAGGCAGCAAAGATCCACA 15367189 Query 2689 ACAAGGCCTATGACCAGCAGCTTAAAGCGGGAGACAACCCATATATAAAATTCAATCACG 2748 || |||| ||| || | |||| ||| | ||||| || | || ||||| | Sbjct 15367190 ACCTCACCTACGACAAGTTAATCAAAGTGGGTAAAAACCCCTAAGTTAACTTCAACTCTG 15367249 Query 2749 CTGACCAGGACTTTATAGATAGCCTCCAAGACGACCAGTCATTCGGAGGTAATCTTGGAA 2808 |||||||||| | |||||||| ||||| | ||| || || || || ||||||| | Sbjct 15367250 CTGACCAGGAACTCATAGATAGTCTCCAGGGTTACC--TCCTTTGGTGGGAATCTTGCTA 15367307 Query 2809 AGGCTGTATTTCAGGCCAAAAAACG 2833 | || |||||||||||||| || Sbjct 15367308 GAGGTGCCTTTCAGGCCAAAAAGCG 15367332 Score = 107 bits (118), Expect = 6e-20 Identities = 259/389 (67%), Gaps = 21/389 (5%) Strand=Plus/Plus Query 3097 CCTCGGGAAATTGGCATTGCGATTCCCAATGGATGGGAAACACAGTCATCACAAAGACCA 3156 ||||||||||||||||||| |||| | |||| ||||| || | ||| | | | Sbjct 15367548 CCTCGGGAAATTGGCATTGTGATTTGCGATGGCAAGGAAATGTGGTTACCACTTGGTCAA 15367607 Query 3157 CCAGAACCTGGGTCCTGCCAAGCTACAACAACCACATCTACAAAGCAATTACCAGCGGAA 3216 || || |||||| | ||| ||| ||||| || |||| ||| ||| | | | || Sbjct 15367608 TGAGGACATGGGTCTTACCATCCTATGACAACAACCTCTAAAAACAAATCAAAGGTGAAA 15367667 Query 3217 CCTCTCAAGATGCAAATGTCC-AGTATGCAGGATACAGTACCCCCTGGGGGTACTTTGAT 3275 |||| || | |||||| || || ||||| ||||| |||| ||| |||| Sbjct 15367668 CCTC---AG----ACATGTCCGCCTACCTCGGGTACAGAACCCCATGGGCCTACCTTGAC 15367720 Query 3276 TTCAACCGCTTCCACTGCCACTTCTCCCCTAGAGACTGGCAGAGACTTATCAACAACCAT 3335 || ||| | ||||| |||| |||||||||||||| |||||||| | | | Sbjct 15367721 TTTAACAGGTTCCAGTGCC-----------AGAGACTGGCAGAGGCTTATCAAAAGCTAC 15367769 Query 3336 TGGGGAATCAGACCCAAGTCTCTTAAATTCAAGATCTTCAATGTCCAAGTCAAAGAAGTC 3395 ||||| | | ||| | | || ||| || |||||||| ||||||| || || ||| Sbjct 15367770 TGGGGGCTTACACCAAGGCCTGCAGGATT-AAAATCTTCAACATCCAAGTTAAGGAGGTC 15367828 Query 3396 ACAACGCAGGATCAGACAAAGACCATTGCAAACAATCTCACCTCAACAATTCAAGTCTTT 3455 ||| | || |||| || ||||| ||||| | ||||| || || ||| ||||| Sbjct 15367829 ACAGAGGTGGTGGGCTCAAAAACAATTGCCAACAACGTAACCTCCACCATCCAAATCTTT 15367888 Query 3456 ACGGATGATGAGCATCAACTCCCGTATGT 3484 | || || ||||||| || ||||| Sbjct 15367889 GC-GACGACACCTATCAACTACCATATGT 15367916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16226652103805