Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_001701.1
Length=5106
Score E
Sequences producing significant alignments: (Bits) Value
seq55 367 4e-98
>seq55
Length=16538760
Score = 367 bits (406), Expect = 4e-98
Identities = 479/656 (73%), Gaps = 9/656 (1%)
Strand=Plus/Plus
Query 1224 GTTGATTGGCTCATTGAAATGGGGATAACATCTGAGAAGCAATGGCTCACTGAGAACCGA 1283
||||||||||| | || | || || ||||||||| ||| ||||| | |||| |
Sbjct 15365646 GTTGATTGGCTAGTGGACAACGGCATTACATCTGAGCGGCAGTGGCTT--TTAGAAGACA 15365703
Query 1284 GAGAGCTACAGAAGCTTTCAAGCAACTTCTTCAAATAATAGACAAGTGAAAGCTGCACTG 1343
| | | | | ||||||| || | || | | | | || || || || || ||
Sbjct 15365704 AAAAA-TCCCGCAGCTTTCGGGCCAGCTCCACGACTTCTCCCCATGTAAAGGCCGCCCTA 15365762
Query 1344 GAAAATGCCCGTGCTGAAATGTTATTGACAAAGACTGCAACTGATTACCTGATAGGAAAA 1403
||||||||| | || || ||| | ||||| || | || || ||||||||||| |||
Sbjct 15365763 GAAAATGCCTGAGCCGAGATGCTTTTGACCAAATCCGCGGAGGACTACCTGATAGGCAAA 15365822
Query 1404 GACCCTGTCCTGGATATAACTAAGAATAGGGTCTATCAAATTCTGAAAATGAATAACTAC 1463
|| || || || || || || | ||| || | | || |||| | |||
Sbjct 15365823 CTGCCGGTGGGAGACATGACAAAAAACAAGGTGCTCCAGCTCTTTCAAGTGAACCAGTAC 15365882
Query 1464 AACCCTCA-ATACATAGGAAGTATCCTGTGCGGCTGGGTGAAGAGAGAGTTCAACAAAAG 1522
|||||| || | || | |||||| | | |||| || ||||| ||||| | ||||
Sbjct 15365883 GACCCTCTGATGCC-AGCCTGGATCCTGGTCTGGTGGGCGAGGAGAGCGTTCAGCGAAAG 15365941
Query 1523 AAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACATTGCAGAAGCTAT 1582
|||||||| ||| ||||| ||||| ||||| || || || ||||| |||| || ||
Sbjct 15365942 GAACGCCATTTGGTTCTACCATCCTGCAACCACGGGAAACACAAACATCACAGAGGCAAT 15366001
Query 1583 TGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTAA 1642
|||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 15366002 TGCCCATGCTGTGCCCTTCTATGGCTGTGTTAACTGGACTAATGAAAACTTTCATTT-AA 15366060
Query 1643 TGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGACTAATAAGGTTGT 1702
||| ||||| || |||||| | ||||||||||| ||||||||||||||||| || |||||
Sbjct 15366061 TGACTGTGTGGACAAAATGATAATTTGGTGGGAAGAGGGAAAAATGACTAAAAATGTTGT 15366120
Query 1703 TGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGTCCGGGTAGACCAGAAATGTAAAGG 1762
||| ||||||||| ||||||||||||||||||| || | | || | ||||||||| ||
Sbjct 15366121 TGAGTCTGCAAAACCAATTTTGGGAGGGTCTGCGGTTCACATTGAGCGGAAATGTAAGGG 15366180
Query 1763 ATCTGTTTGTATTGAACCTACTCCTGTAATTATTACTAGTAATACTGATATGTGTATGAT 1822
|||||| || ||||| |||||||| | || || ||||| |||||||| ||| |
Sbjct 15366181 ATCTGTACAAATGGAACCCACTCCTGTTGTAATCACCAGTAACACTGATATATGT---CT 15366237
Query 1823 TGTTGATGGCAACTCTACTACAATGGAACATAGAATACCATTAGAGGAGCGTATGT 1878
||||||||| || |||||| | ||||| | ||||||||| ||||| ||||
Sbjct 15366238 TGTTGATGGTAATGGTACTACTTTTGAACACAAGGAACCATTAGACGAGCGAATGT 15366293
Score = 150 bits (166), Expect = 6e-33
Identities = 305/445 (69%), Gaps = 11/445 (2%)
Strand=Plus/Plus
Query 2393 GCTTGATGATGCTGAAAATGAACAATAAAGATGACTCAAAGC-AGATATGTCTACTTTTT 2451
|| ||||||| ||| |||||||||| || | | ||| || |||| || |||||
Sbjct 15366895 GCCTGATGATAATGACTTGGAACAATAAA-ATAAGTAAAACATAGCTATGGCTGGTTTTT 15366953
Query 2452 TAGATTCTTTTGAAGAGTGGTATGAGACTGCAGCCGCCTCGTGGCGGAATCTGAAAGCTG 2511
||| | | |||||||| ||||| |||| ||||| || | || || || ||| |||
Sbjct 15366954 TAGGTACCTTTGAAGATTGGTACGAGAAAGCAGCAGCAACCCGGAAAAACCTTAAACCTG 15367013
Query 2512 GAGCCCCTCAGCCAAAACCAAAC--CAGCAGTCT-CAGTCTGTGTCTCCAGACAGAGAAC 2568
|| ||||| |||||||||||| |||||| || ||| |||||||| | ||| |
Sbjct 15367014 GACCCCCTGCCCCAAAACCAAACAGCAGCAGCCTTCAG-CTGTGTCTGAACCTCGAGGAG 15367072
Query 2569 CCGAACGAAAAGATAATAATCGGGGCTTTGTACTTCCTGGCTATAAGTATCTTGGGCCTG 2628
| | |||| | | |||| |||| || |||||||||||||| ||||| |||
Sbjct 15367073 GAGTTC---AAGACACTGCAAGGGGTCTTGTCCTCCCTGGCTATAAGTACCTTGGTCCTT 15367129
Query 2629 GTAACGGCCTGGATAAAGGCCCACCTGTCAATAAGGCGGACAGCGTCGCGCTTGAACACG 2688
||||| ||| ||||| || || || ||||||||| | |||| | || |||
Sbjct 15367130 TTAACGACCTTGATAACGGTCCTCCGGTCAATAAGACAGACAAGGCAGCAAAGATCCACA 15367189
Query 2689 ACAAGGCCTATGACCAGCAGCTTAAAGCGGGAGACAACCCATATATAAAATTCAATCACG 2748
|| |||| ||| || | |||| ||| | ||||| || | || ||||| |
Sbjct 15367190 ACCTCACCTACGACAAGTTAATCAAAGTGGGTAAAAACCCCTAAGTTAACTTCAACTCTG 15367249
Query 2749 CTGACCAGGACTTTATAGATAGCCTCCAAGACGACCAGTCATTCGGAGGTAATCTTGGAA 2808
|||||||||| | |||||||| ||||| | ||| || || || || ||||||| |
Sbjct 15367250 CTGACCAGGAACTCATAGATAGTCTCCAGGGTTACC--TCCTTTGGTGGGAATCTTGCTA 15367307
Query 2809 AGGCTGTATTTCAGGCCAAAAAACG 2833
| || |||||||||||||| ||
Sbjct 15367308 GAGGTGCCTTTCAGGCCAAAAAGCG 15367332
Score = 107 bits (118), Expect = 6e-20
Identities = 259/389 (67%), Gaps = 21/389 (5%)
Strand=Plus/Plus
Query 3097 CCTCGGGAAATTGGCATTGCGATTCCCAATGGATGGGAAACACAGTCATCACAAAGACCA 3156
||||||||||||||||||| |||| | |||| ||||| || | ||| | | |
Sbjct 15367548 CCTCGGGAAATTGGCATTGTGATTTGCGATGGCAAGGAAATGTGGTTACCACTTGGTCAA 15367607
Query 3157 CCAGAACCTGGGTCCTGCCAAGCTACAACAACCACATCTACAAAGCAATTACCAGCGGAA 3216
|| || |||||| | ||| ||| ||||| || |||| ||| ||| | | | ||
Sbjct 15367608 TGAGGACATGGGTCTTACCATCCTATGACAACAACCTCTAAAAACAAATCAAAGGTGAAA 15367667
Query 3217 CCTCTCAAGATGCAAATGTCC-AGTATGCAGGATACAGTACCCCCTGGGGGTACTTTGAT 3275
|||| || | |||||| || || ||||| ||||| |||| ||| ||||
Sbjct 15367668 CCTC---AG----ACATGTCCGCCTACCTCGGGTACAGAACCCCATGGGCCTACCTTGAC 15367720
Query 3276 TTCAACCGCTTCCACTGCCACTTCTCCCCTAGAGACTGGCAGAGACTTATCAACAACCAT 3335
|| ||| | ||||| |||| |||||||||||||| |||||||| | | |
Sbjct 15367721 TTTAACAGGTTCCAGTGCC-----------AGAGACTGGCAGAGGCTTATCAAAAGCTAC 15367769
Query 3336 TGGGGAATCAGACCCAAGTCTCTTAAATTCAAGATCTTCAATGTCCAAGTCAAAGAAGTC 3395
||||| | | ||| | | || ||| || |||||||| ||||||| || || |||
Sbjct 15367770 TGGGGGCTTACACCAAGGCCTGCAGGATT-AAAATCTTCAACATCCAAGTTAAGGAGGTC 15367828
Query 3396 ACAACGCAGGATCAGACAAAGACCATTGCAAACAATCTCACCTCAACAATTCAAGTCTTT 3455
||| | || |||| || ||||| ||||| | ||||| || || ||| |||||
Sbjct 15367829 ACAGAGGTGGTGGGCTCAAAAACAATTGCCAACAACGTAACCTCCACCATCCAAATCTTT 15367888
Query 3456 ACGGATGATGAGCATCAACTCCCGTATGT 3484
| || || ||||||| || |||||
Sbjct 15367889 GC-GACGACACCTATCAACTACCATATGT 15367916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16226652103805
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |