Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq55 127 6e-26 >seq55 Length=16538760 Score = 127 bits (140), Expect = 6e-26 Identities = 201/287 (70%), Gaps = 1/287 (0%) Strand=Plus/Plus Query 1296 AGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACATCGCGGAAGCC 1355 |||||| |||| ||| ||| || || || ||||| || || |||||| | || || Sbjct 15365940 AGGAACGCCATTTGGTTCTACCATCCTGCAACCACGGGAAACACAAACATCACAGAGGCA 15365999 Query 1356 ATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAATGAGAACTTTCCCTTC 1415 || ||||| || ||||||||||| ||||| || |||||||| ||||| |||||| | || Sbjct 15366000 ATTGCCCATGCTGTGCCCTTCTATGGCTGTGTTAACTGGACTAATGAAAACTTT-CATTT 15366058 Query 1416 AACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTC 1475 || || || || ||||| ||| | || |||||||| ||||| || ||||| || || Sbjct 15366059 AATGACTGTGTGGACAAAATGATAATTTGGTGGGAAGAGGGAAAAATGACTAAAAATGTT 15366118 Query 1476 GTGGAGAGCGCCAAGGCCATTCTGGGCGGAAGCAAGGTGCGCGTGGACCAAAAGTGCAAG 1535 || ||| || || | ||| |||| || ||| | | | || | || || ||| Sbjct 15366119 GTTGAGTCTGCAAAACCAATTTTGGGAGGGTCTGCGGTTCACATTGAGCGGAAATGTAAG 15366178 Query 1536 TCATCGGCCCAGATCGAACCCACTCCCGTGATCGTCACCTCCAACAC 1582 ||| | || || ||||||||||| || | ||||| ||||| Sbjct 15366179 GGATCTGTACAAATGGAACCCACTCCTGTTGTAATCACCAGTAACAC 15366225 Score = 93.3 bits (102), Expect = 1e-15 Identities = 321/494 (65%), Gaps = 44/494 (9%) Strand=Plus/Plus Query 3021 CTACTTTGGCTACAGCACCCCTTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTT 3080 |||| | || ||||| ||||| |||| || ||||||||||||| ||||| ||||| Sbjct 15367684 CTACCTCGGGTACAGAACCCCATGGGCCTACCTTGACTTTAACAGGTTCCAGTGCCA--- 15367740 Query 3081 CTCACCACGTGACTGGCAGCGACTCATTAACAACAACT-GGGGATTCCGGCCCAAGAAAC 3139 | ||||||||| | || || || | | ||| |||| || | ||||| Sbjct 15367741 --------GAGACTGGCAGAGGCTTATCAAAAGCTACTGGGGGCTTAC--ACCAAGGCCT 15367790 Query 3140 TCAGCTTCAAGCTCTTCAACATCCAAGTTAGAGGGGTCACGCAGAACGATGGCACGACGA 3199 ||| | || |||||||||||||||||| | |||||| || | ||| | | | Sbjct 15367791 GCAGGATTAAAATCTTCAACATCCAAGTTAAGGAGGTCACAGAGGTGGTGGGCTCAAAAA 15367850 Query 3200 CTATTGCCAATAACCTTACCAGCACGGTTCAAGTGTTTACG--GACTCGGAGTATCAGCT 3257 | |||||||| ||| | ||| ||| | ||| | ||| || ||| | ||||| || Sbjct 15367851 CAATTGCCAACAACGTAACCTCCACCATCCAAATCTTTGCGACGACAC---CTATCAACT 15367907 Query 3258 CCCGTACGTGCTCGGGTCGGCGCAC-CAAGGCTGTCTCCCGCCGTTTCCAGCGGACGTCT 3316 || || ||| | ||| || | |||||||| || | ||||| | | | || | Sbjct 15367908 ACCATATGTG-ACAGGTAACACTACAGAGGGCTGTCTTCCTGCTTTTCCTGGGTATGTGT 15367966 Query 3317 TCATGGTCCCTCAGTATGGATACCTCACCCTGAACAACGGAAGTCAAGCGGTGGGAC--- 3373 ||||| | ||||| ||||| || || || ||| ||| || |||||||| Sbjct 15367967 TCATGCTGCCTCAATATGGGTATTGTACTCT--ACATGGGAGATC---TGGTGGGACAAC 15368021 Query 3374 ---GCTCA----------TCCTTTTACTGCCTGGAGTACTTCCCTTCGCAGATGCTAAGG 3420 | || | ||| || || || ||||||||||| || ||||||||| Sbjct 15368022 ATATCCCACTGTGAGATCTGCTTCTATTGTCTAGAGTACTTCCCCAGTCAAATGCTAAGG 15368081 Query 3421 ACTGGAAATAACTTC-CAATTCAGCTATACCTTCGAGGATGTACCTTTTCACAGCAGCTA 3479 |||||||||| |||| ||||| ||| | || || ||| | || || || | ||| Sbjct 15368082 ACTGGAAATAGCTTCAGCTTTCAG-TATTCTTTTGAAGATCTTCCCTTCCATTCCTGCTT 15368140 Query 3480 CGCTCACAGCCAGA 3493 ||||| | ||||| Sbjct 15368141 TGCTCATAACCAGA 15368154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15010693160905