Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_001829.1
Length=4767
Score E
Sequences producing significant alignments: (Bits) Value
seq55 123 8e-25
>seq55
Length=16538760
Score = 123 bits (136), Expect = 8e-25
Identities = 130/170 (76%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 1350 AGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACATCGCGGAAGCC 1409
|||||| |||| ||| ||| || || || ||||| || || |||||| | || ||
Sbjct 15365940 AGGAACGCCATTTGGTTCTACCATCCTGCAACCACGGGAAACACAAACATCACAGAGGCA 15365999
Query 1410 ATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGAACTTTCCGTTC 1469
|| ||||| || ||||||||||| ||||| || |||||||| ||||| |||||| | ||
Sbjct 15366000 ATTGCCCATGCTGTGCCCTTCTATGGCTGTGTTAACTGGACTAATGAAAACTTT-CATTT 15366058
Query 1470 AACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGAC 1519
|| || || || ||||| ||| | || |||||||| ||||| || |||||
Sbjct 15366059 AATGACTGTGTGGACAAAATGATAATTTGGTGGGAAGAGGGAAAAATGAC 15366108
Score = 89.7 bits (98), Expect = 2e-14
Identities = 265/400 (66%), Gaps = 24/400 (6%)
Strand=Plus/Plus
Query 2974 AGAACCTGGGTCTTGCCCACCTACAACAACCACCTCTACAAGCGACTC---GGAGAGAGC 3030
|| || |||||||| || |||| ||||| ||||||| || | | || || || | |
Sbjct 15367610 AGGACATGGGTCTTACCATCCTATGACAACAACCTCTAAAAACAAATCAAAGGTGAAA-C 15367668
Query 3031 CTGCAGTCCAA--CACCTACAACGGATTCTCCACCCCCTGGGGATACTTTGACTTCAACC 3088
|| ||| | | ||||| ||| | | ||||| |||| ||| ||||||| |||
Sbjct 15367669 CT-CAGACATGTCCGCCTACCTCGGGTACAGAACCCCATGGGCCTACCTTGACTTTAACA 15367727
Query 3089 GCTTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGCA 3148
| ||||| ||||| | ||||||||| | || ||||| | | |||||||
Sbjct 15367728 GGTTCCAGTGCCA-----------GAGACTGGCAGAGGCTTATCAAAAGCTACTGGGGGC 15367776
Query 3149 TGCGACCCAAAGCCATGCGGG-TCAAAATCTTCAACATCCAGGTCAAGGAGGTCAC-GAC 3206
| ||| ||| | ||| || | ||||||||||||||||| || ||||||||||| ||
Sbjct 15367777 TTACACC--AAGGCCTGCAGGATTAAAATCTTCAACATCCAAGTTAAGGAGGTCACAGAG 15367834
Query 3207 GTCGAACGGCGAGACAACGGTGGCTAATAACCTTACCAGCACGGTTCAGATCTTTGCGGA 3266
|| | ||| | ||| | || || ||| | ||| ||| | || |||||||| ||
Sbjct 15367835 GT-GGTGGGCTCAAAAACAATTGCCAACAACGTAACCTCCACCATCCAAATCTTTGC-GA 15367892
Query 3267 CTCGTCGTACGAACTGCCGTACGTGATGGATGCGGGTCAAGAGGGCAGCCTGCCTCCTTT 3326
| | || |||| || || |||| | | | ||||||| | || ||| ||||
Sbjct 15367893 CGACACCTATCAACTACCATATGTGACAGGTAACACTACAGAGGGCTGTCTTCCTGCTTT 15367952
Query 3327 TCCCAACGACGTCTTTATGGTGCCCCAGTACGGCTACTGT 3366
||| | || || ||| |||| || || || || |||
Sbjct 15367953 TCCTGGGTATGTGTTCATGCTGCCTCAATATGGGTATTGT 15367992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15141888731060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |