Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq55 123 8e-25 >seq55 Length=16538760 Score = 123 bits (136), Expect = 8e-25 Identities = 130/170 (76%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 1350 AGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACATCGCGGAAGCC 1409 |||||| |||| ||| ||| || || || ||||| || || |||||| | || || Sbjct 15365940 AGGAACGCCATTTGGTTCTACCATCCTGCAACCACGGGAAACACAAACATCACAGAGGCA 15365999 Query 1410 ATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGAACTTTCCGTTC 1469 || ||||| || ||||||||||| ||||| || |||||||| ||||| |||||| | || Sbjct 15366000 ATTGCCCATGCTGTGCCCTTCTATGGCTGTGTTAACTGGACTAATGAAAACTTT-CATTT 15366058 Query 1470 AACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGAC 1519 || || || || ||||| ||| | || |||||||| ||||| || ||||| Sbjct 15366059 AATGACTGTGTGGACAAAATGATAATTTGGTGGGAAGAGGGAAAAATGAC 15366108 Score = 89.7 bits (98), Expect = 2e-14 Identities = 265/400 (66%), Gaps = 24/400 (6%) Strand=Plus/Plus Query 2974 AGAACCTGGGTCTTGCCCACCTACAACAACCACCTCTACAAGCGACTC---GGAGAGAGC 3030 || || |||||||| || |||| ||||| ||||||| || | | || || || | | Sbjct 15367610 AGGACATGGGTCTTACCATCCTATGACAACAACCTCTAAAAACAAATCAAAGGTGAAA-C 15367668 Query 3031 CTGCAGTCCAA--CACCTACAACGGATTCTCCACCCCCTGGGGATACTTTGACTTCAACC 3088 || ||| | | ||||| ||| | | ||||| |||| ||| ||||||| ||| Sbjct 15367669 CT-CAGACATGTCCGCCTACCTCGGGTACAGAACCCCATGGGCCTACCTTGACTTTAACA 15367727 Query 3089 GCTTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGCA 3148 | ||||| ||||| | ||||||||| | || ||||| | | ||||||| Sbjct 15367728 GGTTCCAGTGCCA-----------GAGACTGGCAGAGGCTTATCAAAAGCTACTGGGGGC 15367776 Query 3149 TGCGACCCAAAGCCATGCGGG-TCAAAATCTTCAACATCCAGGTCAAGGAGGTCAC-GAC 3206 | ||| ||| | ||| || | ||||||||||||||||| || ||||||||||| || Sbjct 15367777 TTACACC--AAGGCCTGCAGGATTAAAATCTTCAACATCCAAGTTAAGGAGGTCACAGAG 15367834 Query 3207 GTCGAACGGCGAGACAACGGTGGCTAATAACCTTACCAGCACGGTTCAGATCTTTGCGGA 3266 || | ||| | ||| | || || ||| | ||| ||| | || |||||||| || Sbjct 15367835 GT-GGTGGGCTCAAAAACAATTGCCAACAACGTAACCTCCACCATCCAAATCTTTGC-GA 15367892 Query 3267 CTCGTCGTACGAACTGCCGTACGTGATGGATGCGGGTCAAGAGGGCAGCCTGCCTCCTTT 3326 | | || |||| || || |||| | | | ||||||| | || ||| |||| Sbjct 15367893 CGACACCTATCAACTACCATATGTGACAGGTAACACTACAGAGGGCTGTCTTCCTGCTTT 15367952 Query 3327 TCCCAACGACGTCTTTATGGTGCCCCAGTACGGCTACTGT 3366 ||| | || || ||| |||| || || || || ||| Sbjct 15367953 TCCTGGGTATGTGTTCATGCTGCCTCAATATGGGTATTGT 15367992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15141888731060