Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_002077.1
Length=4718
Score E
Sequences producing significant alignments: (Bits) Value
seq55 127 6e-26
>seq55
Length=16538760
Score = 127 bits (140), Expect = 6e-26
Identities = 131/170 (77%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 1337 CCGGCCACCACGGGCAAGACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTAC 1396
|| || |||||||| || || |||||| | || || || ||||| || |||||||||||
Sbjct 15365964 CCTGCAACCACGGGAAACACAAACATCACAGAGGCAATTGCCCATGCTGTGCCCTTCTAT 15366023
Query 1397 GGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTG 1456
||||| || |||||||| ||||| |||||| | || ||||| || || ||||| ||| |
Sbjct 15366024 GGCTGTGTTAACTGGACTAATGAAAACTTT-CATTTAATGACTGTGTGGACAAAATGATA 15366082
Query 1457 ATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAA 1506
|| |||||||| ||||| || ||||| || || || ||||| || ||
Sbjct 15366083 ATTTGGTGGGAAGAGGGAAAAATGACTAAAAATGTTGTTGAGTCTGCAAA 15366132
Score = 84.2 bits (92), Expect = 7e-13
Identities = 190/286 (66%), Gaps = 0/286 (0%)
Strand=Plus/Plus
Query 4038 GTGTGGCAAGATAGAGACGTGTACCTGCAGGGTCCCATTTGGGCCAAAATTCCTCACACA 4097
|||||| || ||||| | || || || ||||||||||||||||| | || ||||
Sbjct 15368639 GTGTGGATGGACAGAGATATCTATCTACAAGGTCCCATTTGGGCCAAGACCCCAGACACT 15368698
Query 4098 GATGGACACTTTCACCCGTCTCCTCTTATGGGCGGCTTTGGACTCAAGAACCCGCCTCCT 4157
||||| |||| || || |||| ||||| | |||| || ||| | || || |||
Sbjct 15368699 GATGGTAACTTCCATCCCACTCCCAATATGGTAGACTTTCGATGTAAGCATCCCCCACCT 15368758
Query 4158 CAGATCCTCATCAAAAACACGCCTGTTCCTGCGAATCCTCCGGCGGAGTTTTCAGCTACA 4217
||| || | || || || || ||| |||| | ||||| | ||||||| |
Sbjct 15368759 ATGATTCTGCTTAAGAATACTCCCGTTTCTGCAGAACCTCCAACTACTTTTTCAGTCATC 15368818
Query 4218 AAGTTTGCTTCATTCATCACCCAATACTCCACAGGACAAGTGAGTGTGGAAATTGAATGG 4277
|| |||||||| | |||||| || || || || | || ||||| || |||
Sbjct 15368819 CCTGTTAAGTCATTCATTAGCCAATATGGTACTGGTCAGGTAATAGTAGAAATAGATTGG 15368878
Query 4278 GAGCTGCAGAAAGAAAACAGCAAGCGCTGGAATCCCGAAGTGCAGT 4323
||||| || |||| || ||| | |||||||| || | ||||
Sbjct 15368879 GAGCTAAAGTAAGAGTCAAGTAAGTGGTGGAATCCTGAGATTCAGT 15368924
Score = 77.0 bits (84), Expect = 1e-10
Identities = 153/220 (70%), Gaps = 20/220 (9%)
Strand=Plus/Plus
Query 3038 CTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGATTTCAACAGATTCCACTGCCACTT 3097
|||| |||| ||||| ||||| |||| || |||| || ||||| ||||| |||||
Sbjct 15367684 CTACCTCGGGTACAGAACCCCATGGGCCTACCTTGACTTTAACAGGTTCCAGTGCCA--- 15367740
Query 3098 TTCACCACGTGACTGGCAGCGACTCATCAACAACAATTGGGGA-TTCCGGCCCAAGAGAC 3156
| ||||||||| | || ||||| | | | ||||| || | ||||| | |
Sbjct 15367741 --------GAGACTGGCAGAGGCTTATCAAAAGCTACTGGGGGCTTACA--CCAAG-GCC 15367789
Query 3157 T-CAACTTCAAACTCTTCAACATCCAAGTCAAGGAGGTCAC-GACGAATGATGGCGTC-A 3213
| || | ||| |||||||||||||||| ||||||||||| || | || ||| || |
Sbjct 15367790 TGCAGGATTAAAATCTTCAACATCCAAGTTAAGGAGGTCACAGAGG--TGGTGGGCTCAA 15367847
Query 3214 CAACCATCGCTAATAACCTTACCAGCACGGTTCAAGTCTT 3253
||| || || || ||| | ||| ||| | ||| ||||
Sbjct 15367848 AAACAATTGCCAACAACGTAACCTCCACCATCCAAATCTT 15367887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14985094025265
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |