Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq55 127 6e-26 >seq55 Length=16538760 Score = 127 bits (140), Expect = 6e-26 Identities = 131/170 (77%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 1337 CCGGCCACCACGGGCAAGACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTAC 1396 || || |||||||| || || |||||| | || || || ||||| || ||||||||||| Sbjct 15365964 CCTGCAACCACGGGAAACACAAACATCACAGAGGCAATTGCCCATGCTGTGCCCTTCTAT 15366023 Query 1397 GGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTG 1456 ||||| || |||||||| ||||| |||||| | || ||||| || || ||||| ||| | Sbjct 15366024 GGCTGTGTTAACTGGACTAATGAAAACTTT-CATTTAATGACTGTGTGGACAAAATGATA 15366082 Query 1457 ATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAA 1506 || |||||||| ||||| || ||||| || || || ||||| || || Sbjct 15366083 ATTTGGTGGGAAGAGGGAAAAATGACTAAAAATGTTGTTGAGTCTGCAAA 15366132 Score = 84.2 bits (92), Expect = 7e-13 Identities = 190/286 (66%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 4038 GTGTGGCAAGATAGAGACGTGTACCTGCAGGGTCCCATTTGGGCCAAAATTCCTCACACA 4097 |||||| || ||||| | || || || ||||||||||||||||| | || |||| Sbjct 15368639 GTGTGGATGGACAGAGATATCTATCTACAAGGTCCCATTTGGGCCAAGACCCCAGACACT 15368698 Query 4098 GATGGACACTTTCACCCGTCTCCTCTTATGGGCGGCTTTGGACTCAAGAACCCGCCTCCT 4157 ||||| |||| || || |||| ||||| | |||| || ||| | || || ||| Sbjct 15368699 GATGGTAACTTCCATCCCACTCCCAATATGGTAGACTTTCGATGTAAGCATCCCCCACCT 15368758 Query 4158 CAGATCCTCATCAAAAACACGCCTGTTCCTGCGAATCCTCCGGCGGAGTTTTCAGCTACA 4217 ||| || | || || || || ||| |||| | ||||| | ||||||| | Sbjct 15368759 ATGATTCTGCTTAAGAATACTCCCGTTTCTGCAGAACCTCCAACTACTTTTTCAGTCATC 15368818 Query 4218 AAGTTTGCTTCATTCATCACCCAATACTCCACAGGACAAGTGAGTGTGGAAATTGAATGG 4277 || |||||||| | |||||| || || || || | || ||||| || ||| Sbjct 15368819 CCTGTTAAGTCATTCATTAGCCAATATGGTACTGGTCAGGTAATAGTAGAAATAGATTGG 15368878 Query 4278 GAGCTGCAGAAAGAAAACAGCAAGCGCTGGAATCCCGAAGTGCAGT 4323 ||||| || |||| || ||| | |||||||| || | |||| Sbjct 15368879 GAGCTAAAGTAAGAGTCAAGTAAGTGGTGGAATCCTGAGATTCAGT 15368924 Score = 77.0 bits (84), Expect = 1e-10 Identities = 153/220 (70%), Gaps = 20/220 (9%) Strand=Plus/Plus Query 3038 CTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGATTTCAACAGATTCCACTGCCACTT 3097 |||| |||| ||||| ||||| |||| || |||| || ||||| ||||| ||||| Sbjct 15367684 CTACCTCGGGTACAGAACCCCATGGGCCTACCTTGACTTTAACAGGTTCCAGTGCCA--- 15367740 Query 3098 TTCACCACGTGACTGGCAGCGACTCATCAACAACAATTGGGGA-TTCCGGCCCAAGAGAC 3156 | ||||||||| | || ||||| | | | ||||| || | ||||| | | Sbjct 15367741 --------GAGACTGGCAGAGGCTTATCAAAAGCTACTGGGGGCTTACA--CCAAG-GCC 15367789 Query 3157 T-CAACTTCAAACTCTTCAACATCCAAGTCAAGGAGGTCAC-GACGAATGATGGCGTC-A 3213 | || | ||| |||||||||||||||| ||||||||||| || | || ||| || | Sbjct 15367790 TGCAGGATTAAAATCTTCAACATCCAAGTTAAGGAGGTCACAGAGG--TGGTGGGCTCAA 15367847 Query 3214 CAACCATCGCTAATAACCTTACCAGCACGGTTCAAGTCTT 3253 ||| || || || ||| | ||| ||| | ||| |||| Sbjct 15367848 AAACAATTGCCAACAACGTAACCTCCACCATCCAAATCTT 15367887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14985094025265