Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq55 165 2e-37 >seq55 Length=16538760 Score = 165 bits (182), Expect = 2e-37 Identities = 196/262 (75%), Gaps = 3/262 (1%) Strand=Plus/Plus Query 1248 TGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGG 1307 ||| ||||| || || || |||||| | ||||| ||||||||||||||||| |||||||| Sbjct 15365966 TGCAACCACGGGAAACACAAACATCACAGAGGCAATTGCCCATGCTGTGCCCTTCTATGG 15366025 Query 1308 ATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTAT 1367 || ||||||||||| || || |||||| | || || ||||| || || |||||||| || Sbjct 15366026 CTGTGTTAACTGGACTAATGAAAACTTT-CATTTAATGACTGTGTGGACAAAATGATAAT 15366084 Query 1368 CTGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGG 1427 |||||||| ||||| |||||||| || || || || | || || | ||| |||| Sbjct 15366085 TTGGTGGGAAGAGGGAAAAATGACTAAAAATGTTGTTGAGTCTGCAAAACCAATTTTGGG 15366144 Query 1428 AGGATCT-CGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGC 1486 ||| ||| ||| | | | | || | ||||| || | || || | || ||||| || | Sbjct 15366145 AGGGTCTGCGGTTCACA-TTGAGCGGAAATGTAAGGGATCTGTACAAATGGAACCCACTC 15366203 Query 1487 CGGTCATTATTACCAGTAACAC 1508 | || | || ||||||||||| Sbjct 15366204 CTGTTGTAATCACCAGTAACAC 15366225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14908296618345