Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq55 111 5e-21 >seq55 Length=16538760 Score = 111 bits (122), Expect = 5e-21 Identities = 237/358 (66%), Gaps = 4/358 (1%) Strand=Plus/Plus Query 1334 AGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAAGCC 1393 |||||| || | ||| | || || || ||||| ||||| || |||||| | || || Sbjct 15365940 AGGAACGCCATTTGGTTCTACCATCCTGCAACCACGGGAAACACAAACATCACAGAGGCA 15365999 Query 1394 ATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNNNNN 1453 || | || | |||||||| ||||||||||| |||||||||||||| ||||| Sbjct 15366000 ATTGCCCATGCTGTGCCCTTCTATGGCTGTGTTAACTGGACTAATGAAAACTT-TCATTT 15366058 Query 1454 NNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTG 1513 || |||||| | || |||||||| |||||||| ||||| | || || Sbjct 15366059 AATGACTGTGTGGACAAAATGATAATTTGGTGGGAAGAGGGAAAAATGACTAAAAATGTT 15366118 Query 1514 GTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTACGAGTGGATCAAAAATGTAAA 1573 || || | || || | || ||||| |||||| || | | || | |||||||| Sbjct 15366119 GTTGAGTCTGCAAAACCAATTTTGGGAGGGTCTGCGGTTCACATTGAGCGGAAATGTAAG 15366178 Query 1574 TCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTAACATGTGTGTG 1633 ||||||||| | || | || || || | |||||| || ||| | || ||| Sbjct 15366179 GGATCTGTACAAATGGAACCCACTCCTGTTGTAATCACCAGTAACACTGATATATGT--- 15366235 Query 1634 GTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCATGT 1691 | || ||||| || || || ||||||||| || | || | || || || |||| Sbjct 15366236 CTTGTTGATGGTAATGGTACTACTTTTGAACACAAGGAACCATTAGACGAGCGAATGT 15366293 Score = 107 bits (118), Expect = 6e-20 Identities = 281/419 (67%), Gaps = 35/419 (8%) Strand=Plus/Plus Query 3023 ACCCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAGAGACTGG 3082 ||||| |||| ||| ||||||||||| | ||||| ||||| |||||||| Sbjct 15367700 ACCCCATGGGCCTACCTTGACTTTAACAGGTTCCAGTGCCA-----------GAGACTGG 15367748 Query 3083 CAAAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCAAG-TCCGCATCTT 3141 || ||||| ||||| | | ||||||| || || || || |||| | | ||||| Sbjct 15367749 CAGAGGCTTATCAAAAGCTACTGGGGGCTTACACC--AAGGCCTGCAGGATTAAAATCTT 15367806 Query 3142 CAACATCCAAGTTAAGGAGGTCAC-GACGTCTAACGGGGAG----ACGACCGTATCCAAC 3196 |||||||||||||||||||||||| || || || | | | || | ||||| Sbjct 15367807 CAACATCCAAGTTAAGGAGGTCACAGAGGT-----GGTGGGCTCAAAAACAATTGCCAAC 15367861 Query 3197 AACCTCACCAGCACGGTCCAGATCTTTGCGGACAGCACGTACGAGCTCCCGTACGTGA-T 3255 ||| | ||| ||| |||| |||||||| ||| ||| || | || || || |||| Sbjct 15367862 AACGTAACCTCCACCATCCAAATCTTTGC-GACGACACCTATCAACTACCATATGTGACA 15367920 Query 3256 GGATGCAGGTCAGGAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGCCTCA 3315 || || || |||||| | | ||| |||| || | ||||||||| ||||||| Sbjct 15367921 GGTAACACTACA-GAGGGCTGTCTTCCTGCTTTTCCTGGGTATGTGTTCATGCTGCCTCA 15367979 Query 3316 GTACGGGTACTGCGGACTGGTAACCGGAG-GCAGCTCTCAAAAC----CAGACAGACAGA 3370 || ||||| | | ||| | |||| | | | | ||| | || | ||| Sbjct 15367980 ATATGGGTATT--GTACTCTACATGGGAGATCTGGTGGGACAACATATCCCACTGTGAGA 15368037 Query 3371 AATGCCTTCTACTGTCTGGAGTACTTTCCCAGCCAGATGCTGAGAACCGGAAACAACTT 3429 || |||||| ||||| |||||||| ||||| || ||||| || || ||||| | ||| Sbjct 15368038 TCTG-CTTCTATTGTCTAGAGTACTTCCCCAGTCAAATGCTAAGGACTGGAAATAGCTT 15368095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14905096726390