Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_005889.1
Length=4693
Score E
Sequences producing significant alignments: (Bits) Value
seq55 111 5e-21
>seq55
Length=16538760
Score = 111 bits (122), Expect = 5e-21
Identities = 237/358 (66%), Gaps = 4/358 (1%)
Strand=Plus/Plus
Query 1334 AGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAAGCC 1393
|||||| || | ||| | || || || ||||| ||||| || |||||| | || ||
Sbjct 15365940 AGGAACGCCATTTGGTTCTACCATCCTGCAACCACGGGAAACACAAACATCACAGAGGCA 15365999
Query 1394 ATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNNNNN 1453
|| | || | |||||||| ||||||||||| |||||||||||||| |||||
Sbjct 15366000 ATTGCCCATGCTGTGCCCTTCTATGGCTGTGTTAACTGGACTAATGAAAACTT-TCATTT 15366058
Query 1454 NNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTG 1513
|| |||||| | || |||||||| |||||||| ||||| | || ||
Sbjct 15366059 AATGACTGTGTGGACAAAATGATAATTTGGTGGGAAGAGGGAAAAATGACTAAAAATGTT 15366118
Query 1514 GTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTACGAGTGGATCAAAAATGTAAA 1573
|| || | || || | || ||||| |||||| || | | || | ||||||||
Sbjct 15366119 GTTGAGTCTGCAAAACCAATTTTGGGAGGGTCTGCGGTTCACATTGAGCGGAAATGTAAG 15366178
Query 1574 TCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTAACATGTGTGTG 1633
||||||||| | || | || || || | |||||| || ||| | || |||
Sbjct 15366179 GGATCTGTACAAATGGAACCCACTCCTGTTGTAATCACCAGTAACACTGATATATGT--- 15366235
Query 1634 GTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCATGT 1691
| || ||||| || || || ||||||||| || | || | || || || ||||
Sbjct 15366236 CTTGTTGATGGTAATGGTACTACTTTTGAACACAAGGAACCATTAGACGAGCGAATGT 15366293
Score = 107 bits (118), Expect = 6e-20
Identities = 281/419 (67%), Gaps = 35/419 (8%)
Strand=Plus/Plus
Query 3023 ACCCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAGAGACTGG 3082
||||| |||| ||| ||||||||||| | ||||| ||||| ||||||||
Sbjct 15367700 ACCCCATGGGCCTACCTTGACTTTAACAGGTTCCAGTGCCA-----------GAGACTGG 15367748
Query 3083 CAAAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCAAG-TCCGCATCTT 3141
|| ||||| ||||| | | ||||||| || || || || |||| | | |||||
Sbjct 15367749 CAGAGGCTTATCAAAAGCTACTGGGGGCTTACACC--AAGGCCTGCAGGATTAAAATCTT 15367806
Query 3142 CAACATCCAAGTTAAGGAGGTCAC-GACGTCTAACGGGGAG----ACGACCGTATCCAAC 3196
|||||||||||||||||||||||| || || || | | | || | |||||
Sbjct 15367807 CAACATCCAAGTTAAGGAGGTCACAGAGGT-----GGTGGGCTCAAAAACAATTGCCAAC 15367861
Query 3197 AACCTCACCAGCACGGTCCAGATCTTTGCGGACAGCACGTACGAGCTCCCGTACGTGA-T 3255
||| | ||| ||| |||| |||||||| ||| ||| || | || || || ||||
Sbjct 15367862 AACGTAACCTCCACCATCCAAATCTTTGC-GACGACACCTATCAACTACCATATGTGACA 15367920
Query 3256 GGATGCAGGTCAGGAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGCCTCA 3315
|| || || |||||| | | ||| |||| || | ||||||||| |||||||
Sbjct 15367921 GGTAACACTACA-GAGGGCTGTCTTCCTGCTTTTCCTGGGTATGTGTTCATGCTGCCTCA 15367979
Query 3316 GTACGGGTACTGCGGACTGGTAACCGGAG-GCAGCTCTCAAAAC----CAGACAGACAGA 3370
|| ||||| | | ||| | |||| | | | | ||| | || | |||
Sbjct 15367980 ATATGGGTATT--GTACTCTACATGGGAGATCTGGTGGGACAACATATCCCACTGTGAGA 15368037
Query 3371 AATGCCTTCTACTGTCTGGAGTACTTTCCCAGCCAGATGCTGAGAACCGGAAACAACTT 3429
|| |||||| ||||| |||||||| ||||| || ||||| || || ||||| | |||
Sbjct 15368038 TCTG-CTTCTATTGTCTAGAGTACTTCCCCAGTCAAATGCTAAGGACTGGAAATAGCTT 15368095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14905096726390
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