Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_006147.2
Length=5132
Score E
Sequences producing significant alignments: (Bits) Value
seq55 295 2e-76
>seq55
Length=16538760
Score = 295 bits (326), Expect = 2e-76
Identities = 481/679 (71%), Gaps = 19/679 (3%)
Strand=Plus/Plus
Query 1220 AACTATAGCAATCTGGTTGATTGGCTCATTGAGATGGGTATCACCTCTGAAAAACAGTGG 1279
|| || ||| | ||||||||||||| | || | || || || ||||| ||||||
Sbjct 15365631 AAGTACAGCGAGGTGGTTGATTGGCTAGTGGACAACGGCATTACATCTGAGCGGCAGTGG 15365690
Query 1280 CTAACTGAAAATAAAGAGAGCTACCGGAGCTTTCAGGCTACATCTTCAA-ACAACAGACA 1338
|| ||| | ||| | | ||| ||||||| ||| || || || || | |
Sbjct 15365691 CTTTTAGAAGACAAAAAA---TCCCGCAGCTTTCGGGC--CAGCTCCACGACTTCTCCCC 15365745
Query 1339 A-GTAAAAGCAGCACTTGAAAATGCCCGAGCAGAAATGCTACTAACAAAAACTGCCACAG 1397
| ||||| || || || ||||||||| |||| || ||||| | || ||| | || |
Sbjct 15365746 ATGTAAAGGCCGCCCTAGAAAATGCCTGAGCCGAGATGCTTTTGACCAAATCCGCGGAGG 15365805
Query 1398 ACTATTTGATTGGAAAAGACCCAGTTCTGGACATTACTAAAAATCGGATCTATCAAAT-T 1456
|||| |||| || ||| || || ||||| || ||||| | | || | |
Sbjct 15365806 ACTACCTGATAGGCAAACTGCCGGTGGGAGACATGACAAAAAACAAGGTGCTCCAGCTCT 15365865
Query 1457 CTGAAGTTGAATAACTATAACCCTCAATATGT-AGGGAGCGTCCTATGCGGATGGGTGAA 1515
| |||| ||| | || |||||| ||| || | |||| | | |||| ||
Sbjct 15365866 TTCAAGT-GAACCAGTACGACCCTCTG-ATGCCAGCCTGGATCCTGGTCTGGTGGGCGAG 15365923
Query 1516 AAGAGAATTCAACAAAAGAAATGCCATATGGCTCTACGGACCTGCGACCACCGGAAAGAC 1575
|||| |||| | |||| || ||||| ||| ||||| ||||| ||||| ||||| ||
Sbjct 15365924 GAGAGCGTTCAGCGAAAGGAACGCCATTTGGTTCTACCATCCTGCAACCACGGGAAACAC 15365983
Query 1576 CAACATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAA 1635
||||| | ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 15365984 AAACATCACAGAGGCAATTGCCCATGCTGTGCCCTTCTATGGCTGTGTTAACTGGACTAA 15366043
Query 1636 TGAGAACTTCCCATTTAATGACTGCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAA 1695
||| ||||| | |||||||||||| || || |||||| | || |||||||| ||||||||
Sbjct 15366044 TGAAAACTTTC-ATTTAATGACTGTGTGGACAAAATGATAATTTGGTGGGAAGAGGGAAA 15366102
Query 1696 AATGACCAATAAAGTAGTGGAATCCGCAAAAGCGATACTgggggggTCTGCTGTACGAGT 1755
|||||| || || || || || || |||||| | || |||| |||||||| || | |
Sbjct 15366103 AATGACTAAAAATGTTGTTGAGTCTGCAAAACCAATTTTGGGAGGGTCTGCGGTTCACAT 15366162
Query 1756 TGATCAAAAGTGTAAGGGGTCTGTTTGTATTGAACCTACTCCTGTAATAATTACCAGTAA 1815
||| | || |||||||| ||||| || ||||| |||||||| |||| ||||||||
Sbjct 15366163 TGAGCGGAAATGTAAGGGATCTGTACAAATGGAACCCACTCCTGTTGTAATCACCAGTAA 15366222
Query 1816 TACTGATATGTGCATGATTGTGGATGGAAATTCTACTACAATGGAACACA--GAATTCCT 1873
|||||||| || |||| ||||| ||| |||||| | ||||||| ||| ||
Sbjct 15366223 CACTGATATATG---TCTTGTTGATGGTAATGGTACTACTTTTGAACACAAGGAA--CCA 15366277
Query 1874 TTGGAGGAAAGAATGTTCC 1892
|| || || |||||| ||
Sbjct 15366278 TTAGACGAGCGAATGTCCC 15366296
Score = 91.5 bits (100), Expect = 5e-15
Identities = 438/680 (64%), Gaps = 45/680 (7%)
Strand=Plus/Plus
Query 3108 CCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGGAGACACAGTCATTACCAA---GA 3164
|||| |||||||||||||| |||| | ||||| ||| | || |||||| |
Sbjct 15367548 CCTCGGGAAATTGGCATTGTGATTTGCGATGGCAAGGAAAT---GTGGTTACCACTTGGT 15367604
Query 3165 CTACAAGAACCTGGGTCCTGCCAAGCTACAACAACCACATGTACCAAGCCATCACAAGCG 3224
| | || || |||||| | ||| ||| ||||| || | || || |||| | | |
Sbjct 15367605 CAATGAGGACATGGGTCTTACCATCCTATGACAACAACCTCTAAAAACAAATCAAAGGTG 15367664
Query 3225 GAACAAACCCAGACTCAAATACCCAATATGCTGGATACAGCACCCCCTGGGGGTACTTTG 3284
||| | ||||| | || || || ||||| ||||| |||| ||| |||
Sbjct 15367665 AAAC---CTCAGAC---ATGTCCGCCTACCTCGGGTACAGAACCCCATGGGCCTACCTTG 15367718
Query 3285 ATTTCAACAGATTCCACTGCCATTTCTCTCCAAGAGACTGGCAGAGACTCATCAACAACC 3344
| || ||||| ||||| ||||| ||||||||||||| || ||||| | |
Sbjct 15367719 ACTTTAACAGGTTCCAGTGCCA-----------GAGACTGGCAGAGGCTTATCAAAAGCT 15367767
Query 3345 ATTGGGGGATTAGACCGAAAGCACTCAAATTCAAGATATTCAATGTGCAAGTTAAAGAAG 3404
| |||||| ||| ||| || || || | || || ||||| | |||||||| || |
Sbjct 15367768 ACTGGGGGCTTACACC-AAGGCCTGCAGGATTAAAATCTTCAACATCCAAGTTAAGGAGG 15367826
Query 3405 TCACGACGCAAGACCAGACAAAGACTATTGCTAACAACCTTACCTCTACAATCCAGATAT 3464
|||| | | |||| || ||||| |||||| | ||||| || ||||| || |
Sbjct 15367827 TCACAGAGGTGGTGGGCTCAAAAACAATTGCCAACAACGTAACCTCCACCATCCAAATCT 15367886
Query 3465 TCACGGATAATGA-AC--ACCAGCTGCCCTATGTTCTGGGCTCGGCCACGGAGGGGACGA 3521
| || | || || | || || || ||||| || | || |||||
Sbjct 15367887 TTGCG----ACGACACCTATCAACTACCATATGTGACAGGTAACACTACAGAGGGCTGTC 15367942
Query 3522 TGCCACCGTTCCCCTCAGATGTGT--ATGCCTTGCCCCAGTACGGCTACTGCACAATGCA 3579
| || | || || |||||| |||| |||| || || || || || || | ||
Sbjct 15367943 TTCCTGCTTTTCCTGGGTATGTGTTCATGC--TGCCTCAATATGGGTATTGTACTCTACA 15368000
Query 3580 CACCA-ACCAGAGTGGAGCGAGAT---TCAATGACAGAAGTGCCTTCTATTGCTTAGAGT 3635
| | | | |||| | | || || || ||| || ||||||||| ||||||
Sbjct 15368001 TGGGAGATCTG-GTGGGACAACATATCCCACTGTGAGATCTG-CTTCTATTGTCTAGAGT 15368058
Query 3636 ACTTCCCCAGTCAGATGCTGAGAACAGGGAATA-ATTTTGAATTCAGTTTTGAGTTTGAA 3694
||||||||||||| ||||| || || || |||| || | |||||| || ||||||
Sbjct 15368059 ACTTCCCCAGTCAAATGCTAAGGACTGGAAATAGCTTCAGCTTTCAGTATT-CTTTTGAA 15368117
Query 3695 GAAGTTCCCTTCCATAGCATGTTCGCTCATTCACAGGATTTAGACAGGCTAAT-GAATCC 3753
|| ||||||||||| | || |||||| ||| | || ||| ||| |||||
Sbjct 15368118 GATCTTCCCTTCCATTCCTGCTTTGCTCATAACCAGAAACTA-ACACATCAATCCAATCC 15368176
Query 3754 TCTCCTAGATCAGTACCTGT 3773
|| | |||||||||||||
Sbjct 15368177 ACTGGTTGATCAGTACCTGT 15368196
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16309849294635
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |