Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq55 295 2e-76 >seq55 Length=16538760 Score = 295 bits (326), Expect = 2e-76 Identities = 481/679 (71%), Gaps = 19/679 (3%) Strand=Plus/Plus Query 1220 AACTATAGCAATCTGGTTGATTGGCTCATTGAGATGGGTATCACCTCTGAAAAACAGTGG 1279 || || ||| | ||||||||||||| | || | || || || ||||| |||||| Sbjct 15365631 AAGTACAGCGAGGTGGTTGATTGGCTAGTGGACAACGGCATTACATCTGAGCGGCAGTGG 15365690 Query 1280 CTAACTGAAAATAAAGAGAGCTACCGGAGCTTTCAGGCTACATCTTCAA-ACAACAGACA 1338 || ||| | ||| | | ||| ||||||| ||| || || || || | | Sbjct 15365691 CTTTTAGAAGACAAAAAA---TCCCGCAGCTTTCGGGC--CAGCTCCACGACTTCTCCCC 15365745 Query 1339 A-GTAAAAGCAGCACTTGAAAATGCCCGAGCAGAAATGCTACTAACAAAAACTGCCACAG 1397 | ||||| || || || ||||||||| |||| || ||||| | || ||| | || | Sbjct 15365746 ATGTAAAGGCCGCCCTAGAAAATGCCTGAGCCGAGATGCTTTTGACCAAATCCGCGGAGG 15365805 Query 1398 ACTATTTGATTGGAAAAGACCCAGTTCTGGACATTACTAAAAATCGGATCTATCAAAT-T 1456 |||| |||| || ||| || || ||||| || ||||| | | || | | Sbjct 15365806 ACTACCTGATAGGCAAACTGCCGGTGGGAGACATGACAAAAAACAAGGTGCTCCAGCTCT 15365865 Query 1457 CTGAAGTTGAATAACTATAACCCTCAATATGT-AGGGAGCGTCCTATGCGGATGGGTGAA 1515 | |||| ||| | || |||||| ||| || | |||| | | |||| || Sbjct 15365866 TTCAAGT-GAACCAGTACGACCCTCTG-ATGCCAGCCTGGATCCTGGTCTGGTGGGCGAG 15365923 Query 1516 AAGAGAATTCAACAAAAGAAATGCCATATGGCTCTACGGACCTGCGACCACCGGAAAGAC 1575 |||| |||| | |||| || ||||| ||| ||||| ||||| ||||| ||||| || Sbjct 15365924 GAGAGCGTTCAGCGAAAGGAACGCCATTTGGTTCTACCATCCTGCAACCACGGGAAACAC 15365983 Query 1576 CAACATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAA 1635 ||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 15365984 AAACATCACAGAGGCAATTGCCCATGCTGTGCCCTTCTATGGCTGTGTTAACTGGACTAA 15366043 Query 1636 TGAGAACTTCCCATTTAATGACTGCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAA 1695 ||| ||||| | |||||||||||| || || |||||| | || |||||||| |||||||| Sbjct 15366044 TGAAAACTTTC-ATTTAATGACTGTGTGGACAAAATGATAATTTGGTGGGAAGAGGGAAA 15366102 Query 1696 AATGACCAATAAAGTAGTGGAATCCGCAAAAGCGATACTgggggggTCTGCTGTACGAGT 1755 |||||| || || || || || || |||||| | || |||| |||||||| || | | Sbjct 15366103 AATGACTAAAAATGTTGTTGAGTCTGCAAAACCAATTTTGGGAGGGTCTGCGGTTCACAT 15366162 Query 1756 TGATCAAAAGTGTAAGGGGTCTGTTTGTATTGAACCTACTCCTGTAATAATTACCAGTAA 1815 ||| | || |||||||| ||||| || ||||| |||||||| |||| |||||||| Sbjct 15366163 TGAGCGGAAATGTAAGGGATCTGTACAAATGGAACCCACTCCTGTTGTAATCACCAGTAA 15366222 Query 1816 TACTGATATGTGCATGATTGTGGATGGAAATTCTACTACAATGGAACACA--GAATTCCT 1873 |||||||| || |||| ||||| ||| |||||| | ||||||| ||| || Sbjct 15366223 CACTGATATATG---TCTTGTTGATGGTAATGGTACTACTTTTGAACACAAGGAA--CCA 15366277 Query 1874 TTGGAGGAAAGAATGTTCC 1892 || || || |||||| || Sbjct 15366278 TTAGACGAGCGAATGTCCC 15366296 Score = 91.5 bits (100), Expect = 5e-15 Identities = 438/680 (64%), Gaps = 45/680 (7%) Strand=Plus/Plus Query 3108 CCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGGAGACACAGTCATTACCAA---GA 3164 |||| |||||||||||||| |||| | ||||| ||| | || |||||| | Sbjct 15367548 CCTCGGGAAATTGGCATTGTGATTTGCGATGGCAAGGAAAT---GTGGTTACCACTTGGT 15367604 Query 3165 CTACAAGAACCTGGGTCCTGCCAAGCTACAACAACCACATGTACCAAGCCATCACAAGCG 3224 | | || || |||||| | ||| ||| ||||| || | || || |||| | | | Sbjct 15367605 CAATGAGGACATGGGTCTTACCATCCTATGACAACAACCTCTAAAAACAAATCAAAGGTG 15367664 Query 3225 GAACAAACCCAGACTCAAATACCCAATATGCTGGATACAGCACCCCCTGGGGGTACTTTG 3284 ||| | ||||| | || || || ||||| ||||| |||| ||| ||| Sbjct 15367665 AAAC---CTCAGAC---ATGTCCGCCTACCTCGGGTACAGAACCCCATGGGCCTACCTTG 15367718 Query 3285 ATTTCAACAGATTCCACTGCCATTTCTCTCCAAGAGACTGGCAGAGACTCATCAACAACC 3344 | || ||||| ||||| ||||| ||||||||||||| || ||||| | | Sbjct 15367719 ACTTTAACAGGTTCCAGTGCCA-----------GAGACTGGCAGAGGCTTATCAAAAGCT 15367767 Query 3345 ATTGGGGGATTAGACCGAAAGCACTCAAATTCAAGATATTCAATGTGCAAGTTAAAGAAG 3404 | |||||| ||| ||| || || || | || || ||||| | |||||||| || | Sbjct 15367768 ACTGGGGGCTTACACC-AAGGCCTGCAGGATTAAAATCTTCAACATCCAAGTTAAGGAGG 15367826 Query 3405 TCACGACGCAAGACCAGACAAAGACTATTGCTAACAACCTTACCTCTACAATCCAGATAT 3464 |||| | | |||| || ||||| |||||| | ||||| || ||||| || | Sbjct 15367827 TCACAGAGGTGGTGGGCTCAAAAACAATTGCCAACAACGTAACCTCCACCATCCAAATCT 15367886 Query 3465 TCACGGATAATGA-AC--ACCAGCTGCCCTATGTTCTGGGCTCGGCCACGGAGGGGACGA 3521 | || | || || | || || || ||||| || | || ||||| Sbjct 15367887 TTGCG----ACGACACCTATCAACTACCATATGTGACAGGTAACACTACAGAGGGCTGTC 15367942 Query 3522 TGCCACCGTTCCCCTCAGATGTGT--ATGCCTTGCCCCAGTACGGCTACTGCACAATGCA 3579 | || | || || |||||| |||| |||| || || || || || || | || Sbjct 15367943 TTCCTGCTTTTCCTGGGTATGTGTTCATGC--TGCCTCAATATGGGTATTGTACTCTACA 15368000 Query 3580 CACCA-ACCAGAGTGGAGCGAGAT---TCAATGACAGAAGTGCCTTCTATTGCTTAGAGT 3635 | | | | |||| | | || || || ||| || ||||||||| |||||| Sbjct 15368001 TGGGAGATCTG-GTGGGACAACATATCCCACTGTGAGATCTG-CTTCTATTGTCTAGAGT 15368058 Query 3636 ACTTCCCCAGTCAGATGCTGAGAACAGGGAATA-ATTTTGAATTCAGTTTTGAGTTTGAA 3694 ||||||||||||| ||||| || || || |||| || | |||||| || |||||| Sbjct 15368059 ACTTCCCCAGTCAAATGCTAAGGACTGGAAATAGCTTCAGCTTTCAGTATT-CTTTTGAA 15368117 Query 3695 GAAGTTCCCTTCCATAGCATGTTCGCTCATTCACAGGATTTAGACAGGCTAAT-GAATCC 3753 || ||||||||||| | || |||||| ||| | || ||| ||| ||||| Sbjct 15368118 GATCTTCCCTTCCATTCCTGCTTTGCTCATAACCAGAAACTA-ACACATCAATCCAATCC 15368176 Query 3754 TCTCCTAGATCAGTACCTGT 3773 || | ||||||||||||| Sbjct 15368177 ACTGGTTGATCAGTACCTGT 15368196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16309849294635