Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq55 116 1e-22 >seq55 Length=16538760 Score = 116 bits (128), Expect = 1e-22 Identities = 198/283 (70%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 3815 AGAGACATTTACTTACAGGGGCCTATTTGGGCTAAAATTCCAAATACAGATGGACATTTT 3874 ||||| || || |||| || || |||||||| || | ||| | || ||||| | || Sbjct 15368651 AGAGATATCTATCTACAAGGTCCCATTTGGGCCAAGACCCCAGACACTGATGGTAACTTC 15368710 Query 3875 CATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATCCTCCGCCTATGATTCTGATC 3934 ||||| |||||| |||| | ||| ||| || ||||| || |||||||||||| | Sbjct 15368711 CATCCCACTCCCAATATGGTAGACTTTCGATGTAAGCATCCCCCACCTATGATTCTGCTT 15368770 Query 3935 AAAAATACACCAGTTCCTGCTGATCCTCCAACTAC--CTTCAATCCAATGCCACAGACTA 3992 || ||||| || ||| |||| || ||||||||||| |||| || || | | | | Sbjct 15368771 AAGAATACTCCCGTTTCTGCAGAACCTCCAACTACTTTTTCAGTC--AT--CCCTGTTAA 15368826 Query 3993 GT--TTCATTACTGAATACAGTACAGGACAAGTAACTGTTGAAATGTTGTGGGAGGTACA 4050 || ||||||| |||| |||| || || |||| || ||||| |||||| || | Sbjct 15368827 GTCATTCATTAGCCAATATGGTACTGGTCAGGTAATAGTAGAAATAGATTGGGAGCTAAA 15368886 Query 4051 GAAAGAATCCTCCAAAAGATGGAATCCAGAAGTACAGTTTACT 4093 | |||| || || | |||||||| || | ||||||||| Sbjct 15368887 GTAAGAGTCAAGTAAGTGGTGGAATCCTGAGATTCAGTTTACT 15368929 Score = 100 bits (110), Expect = 8e-18 Identities = 342/525 (65%), Gaps = 35/525 (7%) Strand=Plus/Plus Query 2819 GGATACAAGACTCCCTGGGGGTACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCC 2878 || |||| || || |||| ||| ||||||| || | ||||| ||||| Sbjct 15367691 GGGTACAGAACCCCATGGGCCTACCTTGACTTTAACAGGTTCCAGTGCCA---------- 15367740 Query 2879 CGAGACTGGCAAAGACTCATCAACAACCACACAGGCATCAGGCCGAAAGGACT-CAAAAT 2937 |||||||||| || || ||||| | | || || | | || |||| || || || Sbjct 15367741 -GAGACTGGCAGAGGCTTATCAAAAGCTACTGGGGGCTTACACC--AAGGCCTGCAGGAT 15367797 Query 2938 CAAAGTCTTTAACGTCCAAGTCAAAGAAGTTACAACACAAGAT----TCAACGAAAACAA 2993 ||| |||| ||| ||||||| || || || ||| | | | |||| |||||| Sbjct 15367798 TAAAATCTTCAACATCCAAGTTAAGGAGGTCACAG-AGGTGGTGGGCTCAA---AAACAA 15367853 Query 2994 TTGCCAACAATCTCACCAGCACCGTACAGATCTTTGCGGACGAGAACTACGACTTACCAT 3053 |||||||||| | ||| |||| | || |||||||| ||||| | ||| | |||||| Sbjct 15367854 TTGCCAACAACGTAACCTCCACCATCCAAATCTTTGC-GACGACACCTATCAACTACCAT 15367912 Query 3054 ATGTATTAGGCAGTGCTACACAAGGCACATTTCCTCCATTTCCCAATGATGTATTTATGT 3113 |||| ||| | ||||| | ||| ||||| | ||||| |||| || ||| Sbjct 15367913 ATGTGACAGGTAACACTACAGAGGGCTGTCTTCCTGCTTTTCCTGGGTATGTGTTCATGC 15367972 Query 3114 TACCACAATATGCTTATTGTACACTTCAAGGAAATTC----GGGGAAATTTGT-----AG 3164 | || ||||||| |||||||| || || || | || ||| || | | | Sbjct 15367973 TGCCTCAATATGGGTATTGTACTCTACATGGGAGATCTGGTGGGACAACATATCCCACTG 15368032 Query 3165 ATAGAAGTGCCTTTTATTGTTTAGAATATTTTCCTTCACAAATGCTGAGAACAGGAAACA 3224 ||| || ||| |||||| |||| || || || |||||||| || || ||||| | Sbjct 15368033 TGAGATCTG-CTTCTATTGTCTAGAGTACTTCCCCAGTCAAATGCTAAGGACTGGAAATA 15368091 Query 3225 ATTTTGAGTTCCAGTTTAAATTTGAAGAAGTTCCCTTTCATTCTGGATGGGCACAGAGTC 3284 || || |||| | |||||||| ||||||| ||||| | | || || | | Sbjct 15368092 GCTTCAGCTTTCAGTATTCTTTTGAAGATCTTCCCTTCCATTCCTGCTTTGCTCATAACC 15368151 Query 3285 AAAGCCTAGACAGATTGAT-GAATCCGTTGCTTGATCAATATCTG 3328 | | ||| ||| || || ||||| || ||||||| || ||| Sbjct 15368152 AGAAACTA-ACACATCAATCCAATCCACTGGTTGATCAGTACCTG 15368195 Score = 91.5 bits (100), Expect = 4e-15 Identities = 256/388 (66%), Gaps = 14/388 (4%) Strand=Plus/Plus Query 1284 AGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACCATCATCGCTCAAGCT 1343 || ||| |||| ||| | || ||| || || || || || || | |||| | | || Sbjct 15365940 AGGAACGCCATTTGGTTCTACCATCCTGCAACCACGGGAAACACAAACATCACAGAGGCA 15365999 Query 1344 ATTGCACATGCTGTTAAACTGTTTGCTGGTGTTAATTGGACTAATGAAAACTTTCCCTTC 1403 ||||| |||||||| | | || ||||||| |||||||||||||||||| | || Sbjct 15366000 ATTGCCCATGCTGTGCCCTTCTATGGCTGTGTTAACTGGACTAATGAAAACTTT-CATTT 15366058 Query 1404 TGTAACTGTCCAGGGAAACTGCTTATCTGGTGGGAGGAGGGCAAGATGACAAACAAAATG 1463 | ||||| | ||| || | || |||||||| ||||| || ||||| || || | Sbjct 15366059 AATGACTGTGTGGACAAAATGATAATTTGGTGGGAAGAGGGAAAAATGACTAAAAATGTT 15366118 Query 1464 GTGGAGACGGCTAAATGTATACTGGGGGGATCTGCTGTACCTGTAGACATCAAAGGCAA- 1522 || ||| | || ||| || |||| || ||||| || | | || ||| | || Sbjct 15366119 GTTGAGTCTGCAAAACCAATTTTGGGAGGGTCTGCGGTTCACATTGAGCGGAAATGTAAG 15366178 Query 1523 --ACCCGCTGAAATGTGTCCTCAAACAC-CCTG-TATTATTACTAGCAATACTAACATGT 1578 | | | ||||| || ||| |||| | | || || || || ||| | || | Sbjct 15366179 GGATCTGTACAAATGGAACC-----CACTCCTGTTGTAATCACCAGTAACACTGATATAT 15366233 Query 1579 GTCAAGTATATGATGGTAATAGTTCTAGCTTTGAGCACCAAGAACCCCTAGAGGAACGCA 1638 ||| || |||||||||| || ||| ||||| ||| | ||||| |||| || || | Sbjct 15366234 GTCTTGT---TGATGGTAATGGTACTACTTTTGAACACAAGGAACCATTAGACGAGCGAA 15366290 Query 1639 TGTTTATGTTCAGACTTAATACTAAACT 1666 ||| | || ||| ||| | |||||| Sbjct 15366291 TGTCCCTTTTTAGATTTACTGTTAAACT 15366318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14069924926135