Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_006148.1
Length=4432
Score E
Sequences producing significant alignments: (Bits) Value
seq55 116 1e-22
>seq55
Length=16538760
Score = 116 bits (128), Expect = 1e-22
Identities = 198/283 (70%), Gaps = 8/283 (3%)
Strand=Plus/Plus
Query 3815 AGAGACATTTACTTACAGGGGCCTATTTGGGCTAAAATTCCAAATACAGATGGACATTTT 3874
||||| || || |||| || || |||||||| || | ||| | || ||||| | ||
Sbjct 15368651 AGAGATATCTATCTACAAGGTCCCATTTGGGCCAAGACCCCAGACACTGATGGTAACTTC 15368710
Query 3875 CATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATCCTCCGCCTATGATTCTGATC 3934
||||| |||||| |||| | ||| ||| || ||||| || |||||||||||| |
Sbjct 15368711 CATCCCACTCCCAATATGGTAGACTTTCGATGTAAGCATCCCCCACCTATGATTCTGCTT 15368770
Query 3935 AAAAATACACCAGTTCCTGCTGATCCTCCAACTAC--CTTCAATCCAATGCCACAGACTA 3992
|| ||||| || ||| |||| || ||||||||||| |||| || || | | | |
Sbjct 15368771 AAGAATACTCCCGTTTCTGCAGAACCTCCAACTACTTTTTCAGTC--AT--CCCTGTTAA 15368826
Query 3993 GT--TTCATTACTGAATACAGTACAGGACAAGTAACTGTTGAAATGTTGTGGGAGGTACA 4050
|| ||||||| |||| |||| || || |||| || ||||| |||||| || |
Sbjct 15368827 GTCATTCATTAGCCAATATGGTACTGGTCAGGTAATAGTAGAAATAGATTGGGAGCTAAA 15368886
Query 4051 GAAAGAATCCTCCAAAAGATGGAATCCAGAAGTACAGTTTACT 4093
| |||| || || | |||||||| || | |||||||||
Sbjct 15368887 GTAAGAGTCAAGTAAGTGGTGGAATCCTGAGATTCAGTTTACT 15368929
Score = 100 bits (110), Expect = 8e-18
Identities = 342/525 (65%), Gaps = 35/525 (7%)
Strand=Plus/Plus
Query 2819 GGATACAAGACTCCCTGGGGGTACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCC 2878
|| |||| || || |||| ||| ||||||| || | ||||| |||||
Sbjct 15367691 GGGTACAGAACCCCATGGGCCTACCTTGACTTTAACAGGTTCCAGTGCCA---------- 15367740
Query 2879 CGAGACTGGCAAAGACTCATCAACAACCACACAGGCATCAGGCCGAAAGGACT-CAAAAT 2937
|||||||||| || || ||||| | | || || | | || |||| || || ||
Sbjct 15367741 -GAGACTGGCAGAGGCTTATCAAAAGCTACTGGGGGCTTACACC--AAGGCCTGCAGGAT 15367797
Query 2938 CAAAGTCTTTAACGTCCAAGTCAAAGAAGTTACAACACAAGAT----TCAACGAAAACAA 2993
||| |||| ||| ||||||| || || || ||| | | | |||| ||||||
Sbjct 15367798 TAAAATCTTCAACATCCAAGTTAAGGAGGTCACAG-AGGTGGTGGGCTCAA---AAACAA 15367853
Query 2994 TTGCCAACAATCTCACCAGCACCGTACAGATCTTTGCGGACGAGAACTACGACTTACCAT 3053
|||||||||| | ||| |||| | || |||||||| ||||| | ||| | ||||||
Sbjct 15367854 TTGCCAACAACGTAACCTCCACCATCCAAATCTTTGC-GACGACACCTATCAACTACCAT 15367912
Query 3054 ATGTATTAGGCAGTGCTACACAAGGCACATTTCCTCCATTTCCCAATGATGTATTTATGT 3113
|||| ||| | ||||| | ||| ||||| | ||||| |||| || |||
Sbjct 15367913 ATGTGACAGGTAACACTACAGAGGGCTGTCTTCCTGCTTTTCCTGGGTATGTGTTCATGC 15367972
Query 3114 TACCACAATATGCTTATTGTACACTTCAAGGAAATTC----GGGGAAATTTGT-----AG 3164
| || ||||||| |||||||| || || || | || ||| || | | |
Sbjct 15367973 TGCCTCAATATGGGTATTGTACTCTACATGGGAGATCTGGTGGGACAACATATCCCACTG 15368032
Query 3165 ATAGAAGTGCCTTTTATTGTTTAGAATATTTTCCTTCACAAATGCTGAGAACAGGAAACA 3224
||| || ||| |||||| |||| || || || |||||||| || || ||||| |
Sbjct 15368033 TGAGATCTG-CTTCTATTGTCTAGAGTACTTCCCCAGTCAAATGCTAAGGACTGGAAATA 15368091
Query 3225 ATTTTGAGTTCCAGTTTAAATTTGAAGAAGTTCCCTTTCATTCTGGATGGGCACAGAGTC 3284
|| || |||| | |||||||| ||||||| ||||| | | || || | |
Sbjct 15368092 GCTTCAGCTTTCAGTATTCTTTTGAAGATCTTCCCTTCCATTCCTGCTTTGCTCATAACC 15368151
Query 3285 AAAGCCTAGACAGATTGAT-GAATCCGTTGCTTGATCAATATCTG 3328
| | ||| ||| || || ||||| || ||||||| || |||
Sbjct 15368152 AGAAACTA-ACACATCAATCCAATCCACTGGTTGATCAGTACCTG 15368195
Score = 91.5 bits (100), Expect = 4e-15
Identities = 256/388 (66%), Gaps = 14/388 (4%)
Strand=Plus/Plus
Query 1284 AGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACCATCATCGCTCAAGCT 1343
|| ||| |||| ||| | || ||| || || || || || || | |||| | | ||
Sbjct 15365940 AGGAACGCCATTTGGTTCTACCATCCTGCAACCACGGGAAACACAAACATCACAGAGGCA 15365999
Query 1344 ATTGCACATGCTGTTAAACTGTTTGCTGGTGTTAATTGGACTAATGAAAACTTTCCCTTC 1403
||||| |||||||| | | || ||||||| |||||||||||||||||| | ||
Sbjct 15366000 ATTGCCCATGCTGTGCCCTTCTATGGCTGTGTTAACTGGACTAATGAAAACTTT-CATTT 15366058
Query 1404 TGTAACTGTCCAGGGAAACTGCTTATCTGGTGGGAGGAGGGCAAGATGACAAACAAAATG 1463
| ||||| | ||| || | || |||||||| ||||| || ||||| || || |
Sbjct 15366059 AATGACTGTGTGGACAAAATGATAATTTGGTGGGAAGAGGGAAAAATGACTAAAAATGTT 15366118
Query 1464 GTGGAGACGGCTAAATGTATACTGGGGGGATCTGCTGTACCTGTAGACATCAAAGGCAA- 1522
|| ||| | || ||| || |||| || ||||| || | | || ||| | ||
Sbjct 15366119 GTTGAGTCTGCAAAACCAATTTTGGGAGGGTCTGCGGTTCACATTGAGCGGAAATGTAAG 15366178
Query 1523 --ACCCGCTGAAATGTGTCCTCAAACAC-CCTG-TATTATTACTAGCAATACTAACATGT 1578
| | | ||||| || ||| |||| | | || || || || ||| | || |
Sbjct 15366179 GGATCTGTACAAATGGAACC-----CACTCCTGTTGTAATCACCAGTAACACTGATATAT 15366233
Query 1579 GTCAAGTATATGATGGTAATAGTTCTAGCTTTGAGCACCAAGAACCCCTAGAGGAACGCA 1638
||| || |||||||||| || ||| ||||| ||| | ||||| |||| || || |
Sbjct 15366234 GTCTTGT---TGATGGTAATGGTACTACTTTTGAACACAAGGAACCATTAGACGAGCGAA 15366290
Query 1639 TGTTTATGTTCAGACTTAATACTAAACT 1666
||| | || ||| ||| | ||||||
Sbjct 15366291 TGTCCCTTTTTAGATTTACTGTTAAACT 15366318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14069924926135
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