Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq55 201 3e-48 seq5 78.8 3e-11 >seq55 Length=16538760 Score = 201 bits (222), Expect = 3e-48 Identities = 268/368 (73%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 1316 TTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATC 1375 |||| | | |||||| || | ||| ||||| || || || || || || || |||||| Sbjct 15365931 TTCAGCGAAAGGAACGCCATTTGGTTCTACCATCCTGCAACCACGGGAAACACAAACATC 15365990 Query 1376 GCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAAC 1435 | ||||| || ||||| |||||||||| || ||||| || |||||||| ||||||||| Sbjct 15365991 ACAGAGGCAATTGCCCATGCTGTGCCCTTCTATGGCTGTGTTAACTGGACTAATGAAAAC 15366050 Query 1436 TTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACC 1495 |||| |||||||||||||||||||||||| | ||||||||||| |||||||| ||||| Sbjct 15366051 TTTCA-TTTAATGACTGTGTGGACAAAATGATAATTTGGTGGGAAGAGGGAAAAATGACT 15366109 Query 1496 AACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATCAG 1555 || || || ||||| || || || | || |||| || || ||| | | || | | Sbjct 15366110 AAAAATGTTGTTGAGTCTGCAAAACCAATTTTGGGAGGGTCTGCGGTTCACATTGAGCGG 15366169 Query 1556 AAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAAT-ACAAA 1614 |||||||| ||||| ||||| || | || |||| |||||| ||| | ||| Sbjct 15366170 AAATGTAAGGGATCTGTACAAATGGAACCCACTCCTG---TTGTAATCACCAGTAACACT 15366226 Query 1615 CATGTGTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGA 1674 || | ||| | || ||||| ||| || || ||||||||| || | || | || || Sbjct 15366227 GATATATGT-CTTGTTGATGGTAATGGTACTACTTTTGAACACAAGGAACCATTAGACGA 15366285 Query 1675 CCGCATGT 1682 || |||| Sbjct 15366286 GCGAATGT 15366293 Score = 170 bits (188), Expect = 6e-39 Identities = 361/535 (67%), Gaps = 28/535 (5%) Strand=Plus/Plus Query 2989 CGCCTACTTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCA 3048 ||||||| | || ||||| ||||| |||| ||| ||||||||||| | ||||| |||| Sbjct 15367681 CGCCTACCTCGGGTACAGAACCCCATGGGCCTACCTTGACTTTAACAGGTTCCAGTGCCA 15367740 Query 3049 CTGGAGCCCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTC 3108 |||||||||| || || ||||| | ||||||||| | | ||| || | Sbjct 15367741 -----------GAGACTGGCAGAGGCTTATCAAAAGCTACTGGGGGCTTACACCAAGG-C 15367788 Query 3109 CCTCAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTCAC---GGTGCAGGACTCCAC 3165 | ||| | |||||||||||||| ||||| || |||||||| |||| || ||| | Sbjct 15367789 CTGCAGGATTAAAATCTTCAACATCCAAGTTAAGGAGGTCACAGAGGTGGTGGGCTCAAA 15367848 Query 3166 CACNNNNATCGCCAACAACCTCACCTCCACCGTCCAAGTGTTTACGGACGACGACTACCA 3225 || || ||||||||| | ||||||||| ||||| | ||| | |||||| ||| || Sbjct 15367849 AAC---AATTGCCAACAACGTAACCTCCACCATCCAAATCTTTGC-GACGACACCTATCA 15367904 Query 3226 GCTGCCCTACGTCGTCGGCAACGGGACCGAGGGATGCCTGCCGGCCTTCCCTCCGCAGGT 3285 || || || || || ||| || ||||| || || || || || ||| | | || Sbjct 15367905 ACTACCATATGTGACAGGTAACACTACAGAGGGCTGTCTTCCTGCTTTTCCTGGGTATGT 15367964 Query 3286 CTTTACGCTGCCGCAGTACGGTTACGCGACGCTGAACCGCGACAAC-------ACAGAAA 3338 || | |||||| || || || || || || | | || | | ||| | Sbjct 15367965 GTTCATGCTGCCTCAATATGGGTATTGTACTCT-ACATGGGAGATCTGGTGGGACAACAT 15368023 Query 3339 ATCCCACCGAGAGGAGCAGCTTCTTCTGCCTAGAGTACTTTCCCAGCAAGATGCTGAGAA 3398 ||||||| | || || | |||||| || ||||||||||| ||||| | ||||| || | Sbjct 15368024 ATCCCACTGTGA-GATCTGCTTCTATTGTCTAGAGTACTTCCCCAGTCAAATGCTAAGGA 15368082 Query 3399 CGGGCAACAACTTTGAGTTTACCTACAACTTTGAGGAGGTGCCCTTCCACTCCAGCTTCG 3458 | || || | ||| ||| || ||||| || | |||||||| ||| |||| | Sbjct 15368083 CTGGAAATAGCTTCAGCTTTCAGTATTCTTTTGAAGATCTTCCCTTCCATTCCTGCTTTG 15368142 Query 3459 CTCCCAGTCAGAACCTGTTCAAGCTGGCCAACCCGCTGGTGGACCAGTACTTGTA 3513 ||| | ||||| || | | |||| || ||||| || |||||| |||| Sbjct 15368143 CTCATAACCAGAAACTAACACATCAATCCAATCCACTGGTTGATCAGTACCTGTA 15368197 >seq5 Length=63188916 Score = 78.8 bits (86), Expect = 3e-11 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 4180 CATCACCCAGTACAGCACCGGGCAGGTCACCGTGGAGATGGAGTGGGAGCTCAAGAAGGA 4239 ||| || ||| |||| || || || || || ||||||||||| |||||||| | | || Sbjct 28720049 CATTACTCAGCACAGTACAGGTCAAGTTACTGTGGAGATGGAATGGGAGCTGCAAACAGA 28719990 Query 4240 AAACTCCAAGAGGTGGAACCCAGAGATCCAGTACACAAACAACTACAA 4287 |||| | ||| |||| ||||| |||||||| ||| |||||| ||| Sbjct 28719989 AAACAGTAGGAGATGGAGTCCAGAAATCCAGTATACAGACAACTTCAA 28719942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14741902236685