Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_006152.1
Length=4642
Score E
Sequences producing significant alignments: (Bits) Value
seq55 201 3e-48
seq5 78.8 3e-11
>seq55
Length=16538760
Score = 201 bits (222), Expect = 3e-48
Identities = 268/368 (73%), Gaps = 6/368 (2%)
Strand=Plus/Plus
Query 1316 TTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATC 1375
|||| | | |||||| || | ||| ||||| || || || || || || || ||||||
Sbjct 15365931 TTCAGCGAAAGGAACGCCATTTGGTTCTACCATCCTGCAACCACGGGAAACACAAACATC 15365990
Query 1376 GCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAAC 1435
| ||||| || ||||| |||||||||| || ||||| || |||||||| |||||||||
Sbjct 15365991 ACAGAGGCAATTGCCCATGCTGTGCCCTTCTATGGCTGTGTTAACTGGACTAATGAAAAC 15366050
Query 1436 TTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACC 1495
|||| |||||||||||||||||||||||| | ||||||||||| |||||||| |||||
Sbjct 15366051 TTTCA-TTTAATGACTGTGTGGACAAAATGATAATTTGGTGGGAAGAGGGAAAAATGACT 15366109
Query 1496 AACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATCAG 1555
|| || || ||||| || || || | || |||| || || ||| | | || | |
Sbjct 15366110 AAAAATGTTGTTGAGTCTGCAAAACCAATTTTGGGAGGGTCTGCGGTTCACATTGAGCGG 15366169
Query 1556 AAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAAT-ACAAA 1614
|||||||| ||||| ||||| || | || |||| |||||| ||| | |||
Sbjct 15366170 AAATGTAAGGGATCTGTACAAATGGAACCCACTCCTG---TTGTAATCACCAGTAACACT 15366226
Query 1615 CATGTGTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGA 1674
|| | ||| | || ||||| ||| || || ||||||||| || | || | || ||
Sbjct 15366227 GATATATGT-CTTGTTGATGGTAATGGTACTACTTTTGAACACAAGGAACCATTAGACGA 15366285
Query 1675 CCGCATGT 1682
|| ||||
Sbjct 15366286 GCGAATGT 15366293
Score = 170 bits (188), Expect = 6e-39
Identities = 361/535 (67%), Gaps = 28/535 (5%)
Strand=Plus/Plus
Query 2989 CGCCTACTTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCA 3048
||||||| | || ||||| ||||| |||| ||| ||||||||||| | ||||| ||||
Sbjct 15367681 CGCCTACCTCGGGTACAGAACCCCATGGGCCTACCTTGACTTTAACAGGTTCCAGTGCCA 15367740
Query 3049 CTGGAGCCCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTC 3108
|||||||||| || || ||||| | ||||||||| | | ||| || |
Sbjct 15367741 -----------GAGACTGGCAGAGGCTTATCAAAAGCTACTGGGGGCTTACACCAAGG-C 15367788
Query 3109 CCTCAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTCAC---GGTGCAGGACTCCAC 3165
| ||| | |||||||||||||| ||||| || |||||||| |||| || ||| |
Sbjct 15367789 CTGCAGGATTAAAATCTTCAACATCCAAGTTAAGGAGGTCACAGAGGTGGTGGGCTCAAA 15367848
Query 3166 CACNNNNATCGCCAACAACCTCACCTCCACCGTCCAAGTGTTTACGGACGACGACTACCA 3225
|| || ||||||||| | ||||||||| ||||| | ||| | |||||| ||| ||
Sbjct 15367849 AAC---AATTGCCAACAACGTAACCTCCACCATCCAAATCTTTGC-GACGACACCTATCA 15367904
Query 3226 GCTGCCCTACGTCGTCGGCAACGGGACCGAGGGATGCCTGCCGGCCTTCCCTCCGCAGGT 3285
|| || || || || ||| || ||||| || || || || || ||| | | ||
Sbjct 15367905 ACTACCATATGTGACAGGTAACACTACAGAGGGCTGTCTTCCTGCTTTTCCTGGGTATGT 15367964
Query 3286 CTTTACGCTGCCGCAGTACGGTTACGCGACGCTGAACCGCGACAAC-------ACAGAAA 3338
|| | |||||| || || || || || || | | || | | ||| |
Sbjct 15367965 GTTCATGCTGCCTCAATATGGGTATTGTACTCT-ACATGGGAGATCTGGTGGGACAACAT 15368023
Query 3339 ATCCCACCGAGAGGAGCAGCTTCTTCTGCCTAGAGTACTTTCCCAGCAAGATGCTGAGAA 3398
||||||| | || || | |||||| || ||||||||||| ||||| | ||||| || |
Sbjct 15368024 ATCCCACTGTGA-GATCTGCTTCTATTGTCTAGAGTACTTCCCCAGTCAAATGCTAAGGA 15368082
Query 3399 CGGGCAACAACTTTGAGTTTACCTACAACTTTGAGGAGGTGCCCTTCCACTCCAGCTTCG 3458
| || || | ||| ||| || ||||| || | |||||||| ||| |||| |
Sbjct 15368083 CTGGAAATAGCTTCAGCTTTCAGTATTCTTTTGAAGATCTTCCCTTCCATTCCTGCTTTG 15368142
Query 3459 CTCCCAGTCAGAACCTGTTCAAGCTGGCCAACCCGCTGGTGGACCAGTACTTGTA 3513
||| | ||||| || | | |||| || ||||| || |||||| ||||
Sbjct 15368143 CTCATAACCAGAAACTAACACATCAATCCAATCCACTGGTTGATCAGTACCTGTA 15368197
>seq5
Length=63188916
Score = 78.8 bits (86), Expect = 3e-11
Identities = 82/108 (76%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 4180 CATCACCCAGTACAGCACCGGGCAGGTCACCGTGGAGATGGAGTGGGAGCTCAAGAAGGA 4239
||| || ||| |||| || || || || || ||||||||||| |||||||| | | ||
Sbjct 28720049 CATTACTCAGCACAGTACAGGTCAAGTTACTGTGGAGATGGAATGGGAGCTGCAAACAGA 28719990
Query 4240 AAACTCCAAGAGGTGGAACCCAGAGATCCAGTACACAAACAACTACAA 4287
|||| | ||| |||| ||||| |||||||| ||| |||||| |||
Sbjct 28719989 AAACAGTAGGAGATGGAGTCCAGAAATCCAGTATACAGACAACTTCAA 28719942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14741902236685
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |