Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_006260.1
Length=4721
Score E
Sequences producing significant alignments: (Bits) Value
seq55 114 4e-22
>seq55
Length=16538760
Score = 114 bits (126), Expect = 4e-22
Identities = 128/170 (75%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 1336 CCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTAC 1395
|| || ||||| || || || ||||| | || || || ||||| || |||||||||||
Sbjct 15365964 CCTGCAACCACGGGAAACACAAACATCACAGAGGCAATTGCCCATGCTGTGCCCTTCTAT 15366023
Query 1396 GGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTG 1455
||||| || |||||||| ||||| |||||| | || || || || || ||||| ||| |
Sbjct 15366024 GGCTGTGTTAACTGGACTAATGAAAACTTT-CATTTAATGACTGTGTGGACAAAATGATA 15366082
Query 1456 ATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAA 1505
|| |||||||| ||||| || ||||| || || || ||||| || ||
Sbjct 15366083 ATTTGGTGGGAAGAGGGAAAAATGACTAAAAATGTTGTTGAGTCTGCAAA 15366132
Score = 95.1 bits (104), Expect = 4e-16
Identities = 210/309 (68%), Gaps = 31/309 (10%)
Strand=Plus/Plus
Query 2895 CCTCAGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATTACCACCAGCA 2954
|||| |||||||||||||| |||| ||||| || | || ||||||| |
Sbjct 15367548 CCTCGGGAAATTGGCATTGTGATTTGCGATGGCAAGGAAAT---GTGGTTACCACTTGGT 15367604
Query 2955 CCC---GAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAATCTCCAGTG 3011
| | || |||| | | || |||| ||||| ||||||| || |||||| |||
Sbjct 15367605 CAATGAGGACATGGGTCTTACCATCCTATGACAACAACCTCTAAAAACAAATCAAAGGTG 15367664
Query 3012 AAACTGCAGGTAGTACCAACGACAACACCTACTTCGGCTACAGCACCCCCTGGGGGTATT 3071
|||| ||| || | | | | ||||| |||| ||||| ||||| |||| ||
Sbjct 15367665 AAACCTCAG-----AC--ATGTC--CGCCTACCTCGGGTACAGAACCCCATGGGCCTACC 15367715
Query 3072 TTGACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATCAACA 3131
||||||||||||| ||||| ||||| | ||||||||| | || ||||| |
Sbjct 15367716 TTGACTTTAACAGGTTCCAGTGCCA-----------GAGACTGGCAGAGGCTTATCAAAA 15367764
Query 3132 ACAACT-GGGGATTCCGGCCCAAGAAGCTGC-GGTTCAAGCTCTTCAACATCCAGGTCAA 3189
| ||| |||| || | ||||| |||| || | || ||||||||||||| || ||
Sbjct 15367765 GCTACTGGGGGCTTAC--ACCAAG-GCCTGCAGGATTAAAATCTTCAACATCCAAGTTAA 15367821
Query 3190 GGAGGTCAC 3198
|||||||||
Sbjct 15367822 GGAGGTCAC 15367830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14994693701130
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |