Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq55 114 4e-22 >seq55 Length=16538760 Score = 114 bits (126), Expect = 4e-22 Identities = 128/170 (75%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 1336 CCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTAC 1395 || || ||||| || || || ||||| | || || || ||||| || ||||||||||| Sbjct 15365964 CCTGCAACCACGGGAAACACAAACATCACAGAGGCAATTGCCCATGCTGTGCCCTTCTAT 15366023 Query 1396 GGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTG 1455 ||||| || |||||||| ||||| |||||| | || || || || || ||||| ||| | Sbjct 15366024 GGCTGTGTTAACTGGACTAATGAAAACTTT-CATTTAATGACTGTGTGGACAAAATGATA 15366082 Query 1456 ATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAA 1505 || |||||||| ||||| || ||||| || || || ||||| || || Sbjct 15366083 ATTTGGTGGGAAGAGGGAAAAATGACTAAAAATGTTGTTGAGTCTGCAAA 15366132 Score = 95.1 bits (104), Expect = 4e-16 Identities = 210/309 (68%), Gaps = 31/309 (10%) Strand=Plus/Plus Query 2895 CCTCAGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATTACCACCAGCA 2954 |||| |||||||||||||| |||| ||||| || | || ||||||| | Sbjct 15367548 CCTCGGGAAATTGGCATTGTGATTTGCGATGGCAAGGAAAT---GTGGTTACCACTTGGT 15367604 Query 2955 CCC---GAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAATCTCCAGTG 3011 | | || |||| | | || |||| ||||| ||||||| || |||||| ||| Sbjct 15367605 CAATGAGGACATGGGTCTTACCATCCTATGACAACAACCTCTAAAAACAAATCAAAGGTG 15367664 Query 3012 AAACTGCAGGTAGTACCAACGACAACACCTACTTCGGCTACAGCACCCCCTGGGGGTATT 3071 |||| ||| || | | | | ||||| |||| ||||| ||||| |||| || Sbjct 15367665 AAACCTCAG-----AC--ATGTC--CGCCTACCTCGGGTACAGAACCCCATGGGCCTACC 15367715 Query 3072 TTGACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATCAACA 3131 ||||||||||||| ||||| ||||| | ||||||||| | || ||||| | Sbjct 15367716 TTGACTTTAACAGGTTCCAGTGCCA-----------GAGACTGGCAGAGGCTTATCAAAA 15367764 Query 3132 ACAACT-GGGGATTCCGGCCCAAGAAGCTGC-GGTTCAAGCTCTTCAACATCCAGGTCAA 3189 | ||| |||| || | ||||| |||| || | || ||||||||||||| || || Sbjct 15367765 GCTACTGGGGGCTTAC--ACCAAG-GCCTGCAGGATTAAAATCTTCAACATCCAAGTTAA 15367821 Query 3190 GGAGGTCAC 3198 ||||||||| Sbjct 15367822 GGAGGTCAC 15367830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14994693701130