Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq55 118 3e-23 >seq55 Length=16538760 Score = 118 bits (130), Expect = 3e-23 Identities = 129/170 (76%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 1235 CCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTAC 1294 || || ||||| || || || ||||| | || || || ||||| || ||||||||||| Sbjct 15365964 CCTGCAACCACGGGAAACACAAACATCACAGAGGCAATTGCCCATGCTGTGCCCTTCTAT 15366023 Query 1295 GGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTG 1354 ||||| || |||||||| ||||| |||||| | || ||||| || || ||||| ||| | Sbjct 15366024 GGCTGTGTTAACTGGACTAATGAAAACTTT-CATTTAATGACTGTGTGGACAAAATGATA 15366082 Query 1355 ATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAA 1404 || |||||||| ||||| || ||||| || || || ||||| || || Sbjct 15366083 ATTTGGTGGGAAGAGGGAAAAATGACTAAAAATGTTGTTGAGTCTGCAAA 15366132 Score = 102 bits (112), Expect = 2e-18 Identities = 152/213 (71%), Gaps = 16/213 (8%) Strand=Plus/Plus Query 2941 CCTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACT 3000 ||||| |||| ||||| ||||| |||| || ||||||||||||| ||||| ||||| Sbjct 15367683 CCTACCTCGGGTACAGAACCCCATGGGCCTACCTTGACTTTAACAGGTTCCAGTGCCA-- 15367740 Query 3001 TTTCACCACGTGACTGGCAGCGACTCATCAACAACAACT-GGGGATTCCGGCCCAAGAGA 3059 | ||||||||| | || ||||| | | ||| |||| || | ||||| | Sbjct 15367741 ---------GAGACTGGCAGAGGCTTATCAAAAGCTACTGGGGGCTTAC--ACCAAG-GC 15367788 Query 3060 CT-CAGCTTCAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGCAGAATGAAGGCACCAA 3118 || ||| | || ||||||||||||| || ||||||||||| || | ||| | || Sbjct 15367789 CTGCAGGATTAAAATCTTCAACATCCAAGTTAAGGAGGTCACAGAGGTGGTGGGCTCAAA 15367848 Query 3119 GACCATCGCCAATAACCTCACCAGCACCATCCA 3151 || || ||||| ||| | ||| ||||||||| Sbjct 15367849 AACAATTGCCAACAACGTAACCTCCACCATCCA 15367881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13945129139890