Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq55 172 2e-39 >seq55 Length=16538760 Score = 172 bits (190), Expect = 2e-39 Identities = 199/264 (75%), Gaps = 3/264 (1%) Strand=Plus/Plus Query 1246 CCTGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTAT 1305 ||||| ||||| || || || |||||| | ||||| ||||||||||||||||| |||||| Sbjct 15365964 CCTGCAACCACGGGAAACACAAACATCACAGAGGCAATTGCCCATGCTGTGCCCTTCTAT 15366023 Query 1306 GGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGATT 1365 || || ||||||||||| || || |||||| | || || ||||| || || || ||||| Sbjct 15366024 GGCTGTGTTAACTGGACTAATGAAAACTTT-CATTTAATGACTGTGTGGACAAAATGATA 15366082 Query 1366 ATCTGGTGGGAAGAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTCTG 1425 || |||||||||||||| |||||||| || || || || | || ||| | ||| || Sbjct 15366083 ATTTGGTGGGAAGAGGGAAAAATGACTAAAAATGTTGTTGAGTCTGCAAAACCAATTTTG 15366142 Query 1426 GGAGGATCT-CGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGAC 1484 ||||| ||| ||| | | | | || | ||||| || | || || | || ||||| || Sbjct 15366143 GGAGGGTCTGCGGTTCACA-TTGAGCGGAAATGTAAGGGATCTGTACAAATGGAACCCAC 15366201 Query 1485 GCCGGTCATTATTACCAGTAACAC 1508 || || | || ||||||||||| Sbjct 15366202 TCCTGTTGTAATCACCAGTAACAC 15366225 Score = 78.8 bits (86), Expect = 3e-11 Identities = 99/136 (73%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 4084 ACAGAGACATTTACCTCCAAGGACCCATTTGGGCCAAAATCCCCGACACAGACAATCACT 4143 ||||||| || || || ||||| |||||||||||||| | ||| ||||| || | ||| Sbjct 15368649 ACAGAGATATCTATCTACAAGGTCCCATTTGGGCCAAGACCCCAGACACTGATGGTAACT 15368708 Query 4144 TCCATCCGTCCCCGCTTATTGGCGGGTTTGGCTGCAAGCATCCCCCTCCCCAGATTTTCA 4203 ||||||| | || ||| | | ||| | || ||||||||||| || |||| | Sbjct 15368709 TCCATCCCACTCCCAATATGGTAGACTTTCGATGTAAGCATCCCCCACCTATGATTCTGC 15368768 Query 4204 TTAAAAACACACCCGT 4219 |||| || || ||||| Sbjct 15368769 TTAAGAATACTCCCGT 15368784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14869897914885