Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_006263.1
Length=4682
Score E
Sequences producing significant alignments: (Bits) Value
seq55 172 2e-39
>seq55
Length=16538760
Score = 172 bits (190), Expect = 2e-39
Identities = 199/264 (75%), Gaps = 3/264 (1%)
Strand=Plus/Plus
Query 1246 CCTGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTAT 1305
||||| ||||| || || || |||||| | ||||| ||||||||||||||||| ||||||
Sbjct 15365964 CCTGCAACCACGGGAAACACAAACATCACAGAGGCAATTGCCCATGCTGTGCCCTTCTAT 15366023
Query 1306 GGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGATT 1365
|| || ||||||||||| || || |||||| | || || ||||| || || || |||||
Sbjct 15366024 GGCTGTGTTAACTGGACTAATGAAAACTTT-CATTTAATGACTGTGTGGACAAAATGATA 15366082
Query 1366 ATCTGGTGGGAAGAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTCTG 1425
|| |||||||||||||| |||||||| || || || || | || ||| | ||| ||
Sbjct 15366083 ATTTGGTGGGAAGAGGGAAAAATGACTAAAAATGTTGTTGAGTCTGCAAAACCAATTTTG 15366142
Query 1426 GGAGGATCT-CGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGAC 1484
||||| ||| ||| | | | | || | ||||| || | || || | || ||||| ||
Sbjct 15366143 GGAGGGTCTGCGGTTCACA-TTGAGCGGAAATGTAAGGGATCTGTACAAATGGAACCCAC 15366201
Query 1485 GCCGGTCATTATTACCAGTAACAC 1508
|| || | || |||||||||||
Sbjct 15366202 TCCTGTTGTAATCACCAGTAACAC 15366225
Score = 78.8 bits (86), Expect = 3e-11
Identities = 99/136 (73%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 4084 ACAGAGACATTTACCTCCAAGGACCCATTTGGGCCAAAATCCCCGACACAGACAATCACT 4143
||||||| || || || ||||| |||||||||||||| | ||| ||||| || | |||
Sbjct 15368649 ACAGAGATATCTATCTACAAGGTCCCATTTGGGCCAAGACCCCAGACACTGATGGTAACT 15368708
Query 4144 TCCATCCGTCCCCGCTTATTGGCGGGTTTGGCTGCAAGCATCCCCCTCCCCAGATTTTCA 4203
||||||| | || ||| | | ||| | || ||||||||||| || |||| |
Sbjct 15368709 TCCATCCCACTCCCAATATGGTAGACTTTCGATGTAAGCATCCCCCACCTATGATTCTGC 15368768
Query 4204 TTAAAAACACACCCGT 4219
|||| || || |||||
Sbjct 15368769 TTAAGAATACTCCCGT 15368784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14869897914885
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |