Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq55 104 6e-19 >seq55 Length=16538760 Score = 104 bits (114), Expect = 6e-19 Identities = 124/167 (74%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 1160 AACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGAACCTCGCCGAGGCCATC 1219 ||| || | ||| ||| | || || || || || || || ||| || | ||||| || Sbjct 15365943 AACGCCATTTGGTTCTACCATCCTGCAACCACGGGAAACACAAACATCACAGAGGCAATT 15366002 Query 1220 AGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAGAACTTCCCCTTCAAC 1279 ||| | ||||||||||| ||||| || |||||||| || || ||||| | || || Sbjct 15366003 GCCCATGCTGTGCCCTTCTATGGCTGTGTTAACTGGACTAATGAAAACTT-TCATTTAAT 15366061 Query 1280 GACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGATGAC 1326 ||||| |||||||| ||||| || |||||||| ||||| || ||||| Sbjct 15366062 GACTGTGTGGACAAAATGATAATTTGGTGGGAAGAGGGAAAAATGAC 15366108 Score = 95.1 bits (104), Expect = 3e-16 Identities = 178/256 (70%), Gaps = 8/256 (3%) Strand=Plus/Plus Query 2900 CCAGGGACTGGCAGCGGCTCATCAACAACCACTGGGGCATCCGCCCCAAGCGGCTCCACT 2959 |||| ||||||||| |||| ||||| | | ||||||| | | ||||| | || || Sbjct 15367738 CCAGAGACTGGCAGAGGCTTATCAAAAGCTACTGGGGGCTTA-CACCAAG-GCCTGCAGG 15367795 Query 2960 -TTAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGACGACCGACGGCACCACGACCATC 3018 |||| ||||||||||||| || ||||||||||| | | ||| | | || || Sbjct 15367796 ATTAAAATCTTCAACATCCAAGTTAAGGAGGTCACAGAGGTGGTGGGCTCAAAAACAATT 15367855 Query 3019 GCCAACAACCTCACCAGCACCATACAGGTCTTTGCG--GACACGGAGTACCAGCTCCCGT 3076 ||||||||| | ||| |||||| || |||||||| ||||| || || || || | Sbjct 15367856 GCCAACAACGTAACCTCCACCATCCAAATCTTTGCGACGACAC---CTATCAACTACCAT 15367912 Query 3077 ACGTGCTCGGCAACGCCCACGAGGGCTGCCTGCCGCCGTTCCCGGCGGACGTCTTCATGC 3136 | ||| || ||| | |||||||| || || | || || | | | || ||||||| Sbjct 15367913 ATGTGACAGGTAACACTACAGAGGGCTGTCTTCCTGCTTTTCCTGGGTATGTGTTCATGC 15367972 Query 3137 TGCCGCAGTACGCGTA 3152 |||| || || | ||| Sbjct 15367973 TGCCTCAATATGGGTA 15367988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13602740700705