Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_014468.1
Length=4286
Score E
Sequences producing significant alignments: (Bits) Value
seq55 104 6e-19
>seq55
Length=16538760
Score = 104 bits (114), Expect = 6e-19
Identities = 124/167 (74%), Gaps = 1/167 (1%)
Strand=Plus/Plus
Query 1160 AACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGAACCTCGCCGAGGCCATC 1219
||| || | ||| ||| | || || || || || || || ||| || | ||||| ||
Sbjct 15365943 AACGCCATTTGGTTCTACCATCCTGCAACCACGGGAAACACAAACATCACAGAGGCAATT 15366002
Query 1220 AGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAGAACTTCCCCTTCAAC 1279
||| | ||||||||||| ||||| || |||||||| || || ||||| | || ||
Sbjct 15366003 GCCCATGCTGTGCCCTTCTATGGCTGTGTTAACTGGACTAATGAAAACTT-TCATTTAAT 15366061
Query 1280 GACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGATGAC 1326
||||| |||||||| ||||| || |||||||| ||||| || |||||
Sbjct 15366062 GACTGTGTGGACAAAATGATAATTTGGTGGGAAGAGGGAAAAATGAC 15366108
Score = 95.1 bits (104), Expect = 3e-16
Identities = 178/256 (70%), Gaps = 8/256 (3%)
Strand=Plus/Plus
Query 2900 CCAGGGACTGGCAGCGGCTCATCAACAACCACTGGGGCATCCGCCCCAAGCGGCTCCACT 2959
|||| ||||||||| |||| ||||| | | ||||||| | | ||||| | || ||
Sbjct 15367738 CCAGAGACTGGCAGAGGCTTATCAAAAGCTACTGGGGGCTTA-CACCAAG-GCCTGCAGG 15367795
Query 2960 -TTAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGACGACCGACGGCACCACGACCATC 3018
|||| ||||||||||||| || ||||||||||| | | ||| | | || ||
Sbjct 15367796 ATTAAAATCTTCAACATCCAAGTTAAGGAGGTCACAGAGGTGGTGGGCTCAAAAACAATT 15367855
Query 3019 GCCAACAACCTCACCAGCACCATACAGGTCTTTGCG--GACACGGAGTACCAGCTCCCGT 3076
||||||||| | ||| |||||| || |||||||| ||||| || || || || |
Sbjct 15367856 GCCAACAACGTAACCTCCACCATCCAAATCTTTGCGACGACAC---CTATCAACTACCAT 15367912
Query 3077 ACGTGCTCGGCAACGCCCACGAGGGCTGCCTGCCGCCGTTCCCGGCGGACGTCTTCATGC 3136
| ||| || ||| | |||||||| || || | || || | | | || |||||||
Sbjct 15367913 ATGTGACAGGTAACACTACAGAGGGCTGTCTTCCTGCTTTTCCTGGGTATGTGTTCATGC 15367972
Query 3137 TGCCGCAGTACGCGTA 3152
|||| || || | |||
Sbjct 15367973 TGCCTCAATATGGGTA 15367988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 13602740700705
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |