Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_016744.1 Length=5065 Score E Sequences producing significant alignments: (Bits) Value seq55 78.8 3e-11 >seq55 Length=16538760 Score = 78.8 bits (86), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 9/136 (7%) Strand=Plus/Plus Query 1268 CTACGGCTGTGTAAACTGGACTAATGCCAACTTTCCTTTTAATGACTGCCACTGT----C 1323 ||| |||||||| ||||||||||||| |||||| | ||||||||||| ||| Sbjct 15366020 CTATGGCTGTGTTAACTGGACTAATGAAAACTTT-CATTTAATGACTG----TGTGGACA 15366074 Query 1324 AACCGCTAGTGTGGTGGGAGGAAGGCCGAATGACTGAAAACATTGTGGAAGTGGCCAAAG 1383 || | || | |||||||| || || ||||||| |||| |||| || || ||| Sbjct 15366075 AAATGATAATTTGGTGGGAAGAGGGAAAAATGACTAAAAATGTTGTTGAGTCTGCAAAAC 15366134 Query 1384 CAATTTTGGGAGGATC 1399 ||||||||||||| || Sbjct 15366135 CAATTTTGGGAGGGTC 15366150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16095456533650