Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_027429.1 Length=4590 Score E Sequences producing significant alignments: (Bits) Value seq55 114 4e-22 >seq55 Length=16538760 Score = 114 bits (126), Expect = 4e-22 Identities = 271/405 (67%), Gaps = 6/405 (1%) Strand=Plus/Plus Query 1341 aaaGGAATACCATCTGGCTCTACGGACCAGCTACCACCGGAAAGACTATTATAGCGCAAG 1400 ||||||| |||| ||| ||||| || || ||||| ||||| || | || | | | Sbjct 15365938 AAAGGAACGCCATTTGGTTCTACCATCCTGCAACCACGGGAAACACAAACATCACAGAGG 15365997 Query 1401 CTATAGCCCACGGTGCTGTCCT-CTTTGGAGGAGTCAATTGGACTAATGAAAACTTTCCC 1459 | || ||||| | || || ||| || ||| | || || |||||||||||||||||| | Sbjct 15365998 CAATTGCCCATGCTG-TGCCCTTCTATGGCTGTGTTAACTGGACTAATGAAAACTTT-CA 15366055 Query 1460 TTTTGTAATTGTCCTGGTAAACTGTTGATATGGTGGGAAGAGGGTAAAATGACACAAAAG 1519 ||| | | ||| | ||| || | || |||||||||||||| |||||||| |||| Sbjct 15366056 TTTAATGACTGTGTGGACAAAATGATAATTTGGTGGGAAGAGGGAAAAATGACTAAAAAT 15366115 Query 1520 ATGGTCGAAACCGCCAAATGTATATTAGGCGGTGCTGTTGTACCTGTGGATATCAAAGGC 1579 | || || | || ||| || || || || ||| || | | || ||| | Sbjct 15366116 GTTGTTGAGTCTGCAAAACCAATTTTGGGAGGGTCTGCGGTTCACATTGAGCGGAAATGT 15366175 Query 1580 AAAATGGCTGAACTGTGTGAAACCACCCCTGTCATTATTACCAGTAATACCAACATGTGT 1639 || ||| || ||| |||| ||||| | || |||||||| || | || ||| Sbjct 15366176 AAGGGATCTGTACAAATGGAACCCACTCCTGTTGTAATCACCAGTAACACTGATATATGT 15366235 Query 1640 CAGGTCTTTGATGGTAACAGTAGCAGTTTTGAACATACCGAACCCTTAGAAGAAAGAATG 1699 | | |||||||||| ||| | ||||||||| | ||||| ||||| || ||||| Sbjct 15366236 C---TTGTTGATGGTAATGGTACTACTTTTGAACACAAGGAACCATTAGACGAGCGAATG 15366292 Query 1700 TTTATGTTTAGGTTGAATAAGAAACTGGAACCTGATTTTGGAAAA 1744 | | ||||| || | | ||||| || ||| ||||| ||| Sbjct 15366293 TCCCTTTTTAGATTTACTGTTAAACTAAGACATGAGTTTGGCAAA 15366337 Score = 91.5 bits (100), Expect = 4e-15 Identities = 192/284 (68%), Gaps = 8/284 (3%) Strand=Plus/Plus Query 3881 ACAGAGATATTTACCTGCAAGGTCCCATCTGGGCTAAAATACCCGATACCGATGGACACT 3940 |||||||||| || || ||||||||||| ||||| || | || || || ||||| ||| Sbjct 15368649 ACAGAGATATCTATCTACAAGGTCCCATTTGGGCCAAGACCCCAGACACTGATGGTAACT 15368708 Query 3941 TTCACCCGTCTCCACAAATGGGTGGTTTCGGACTTAAAAACCCACCACCGATGATCCTCA 4000 | || || |||| | |||| | || || ||| | || ||||| ||||| || Sbjct 15368709 TCCATCCCACTCCCAATATGGTAGACTTTCGATGTAAGCATCCCCCACCTATGATTCTGC 15368768 Query 4001 TCAAAAACACACCCGTTCCCGCCGATCCACCAACGACCTTCAAACCGACTCCGATGAACA 4060 | || || || |||||| | || || || ||||| || || | | || | || Sbjct 15368769 TTAAGAATACTCCCGTTTCTGCAGAACCTCCAACTACTTTTTCAGTCATCCCTGTTAAGT 15368828 Query 4061 GCTTCATCAGCGAATACAGTACCGGTCAGGTGACTGTAGAGATGCTGTGGGAGGTCCGGA 4120 ||||| ||| |||| |||| |||||||| | ||||| || |||||| | | Sbjct 15368829 CATTCATTAGCCAATATGGTACTGGTCAGGTAATAGTAGAAATAGATTGGGAGCT----A 15368884 Query 4121 AAG-AAGACTC---CAAGAGATGGAACCCGGAAATCCAGTTTAC 4160 ||| |||| || ||| | ||||| || || || |||||||| Sbjct 15368885 AAGTAAGAGTCAAGTAAGTGGTGGAATCCTGAGATTCAGTTTAC 15368928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14575507855025