Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_027429.1
Length=4590
Score E
Sequences producing significant alignments: (Bits) Value
seq55 114 4e-22
>seq55
Length=16538760
Score = 114 bits (126), Expect = 4e-22
Identities = 271/405 (67%), Gaps = 6/405 (1%)
Strand=Plus/Plus
Query 1341 aaaGGAATACCATCTGGCTCTACGGACCAGCTACCACCGGAAAGACTATTATAGCGCAAG 1400
||||||| |||| ||| ||||| || || ||||| ||||| || | || | | |
Sbjct 15365938 AAAGGAACGCCATTTGGTTCTACCATCCTGCAACCACGGGAAACACAAACATCACAGAGG 15365997
Query 1401 CTATAGCCCACGGTGCTGTCCT-CTTTGGAGGAGTCAATTGGACTAATGAAAACTTTCCC 1459
| || ||||| | || || ||| || ||| | || || |||||||||||||||||| |
Sbjct 15365998 CAATTGCCCATGCTG-TGCCCTTCTATGGCTGTGTTAACTGGACTAATGAAAACTTT-CA 15366055
Query 1460 TTTTGTAATTGTCCTGGTAAACTGTTGATATGGTGGGAAGAGGGTAAAATGACACAAAAG 1519
||| | | ||| | ||| || | || |||||||||||||| |||||||| ||||
Sbjct 15366056 TTTAATGACTGTGTGGACAAAATGATAATTTGGTGGGAAGAGGGAAAAATGACTAAAAAT 15366115
Query 1520 ATGGTCGAAACCGCCAAATGTATATTAGGCGGTGCTGTTGTACCTGTGGATATCAAAGGC 1579
| || || | || ||| || || || || ||| || | | || ||| |
Sbjct 15366116 GTTGTTGAGTCTGCAAAACCAATTTTGGGAGGGTCTGCGGTTCACATTGAGCGGAAATGT 15366175
Query 1580 AAAATGGCTGAACTGTGTGAAACCACCCCTGTCATTATTACCAGTAATACCAACATGTGT 1639
|| ||| || ||| |||| ||||| | || |||||||| || | || |||
Sbjct 15366176 AAGGGATCTGTACAAATGGAACCCACTCCTGTTGTAATCACCAGTAACACTGATATATGT 15366235
Query 1640 CAGGTCTTTGATGGTAACAGTAGCAGTTTTGAACATACCGAACCCTTAGAAGAAAGAATG 1699
| | |||||||||| ||| | ||||||||| | ||||| ||||| || |||||
Sbjct 15366236 C---TTGTTGATGGTAATGGTACTACTTTTGAACACAAGGAACCATTAGACGAGCGAATG 15366292
Query 1700 TTTATGTTTAGGTTGAATAAGAAACTGGAACCTGATTTTGGAAAA 1744
| | ||||| || | | ||||| || ||| ||||| |||
Sbjct 15366293 TCCCTTTTTAGATTTACTGTTAAACTAAGACATGAGTTTGGCAAA 15366337
Score = 91.5 bits (100), Expect = 4e-15
Identities = 192/284 (68%), Gaps = 8/284 (3%)
Strand=Plus/Plus
Query 3881 ACAGAGATATTTACCTGCAAGGTCCCATCTGGGCTAAAATACCCGATACCGATGGACACT 3940
|||||||||| || || ||||||||||| ||||| || | || || || ||||| |||
Sbjct 15368649 ACAGAGATATCTATCTACAAGGTCCCATTTGGGCCAAGACCCCAGACACTGATGGTAACT 15368708
Query 3941 TTCACCCGTCTCCACAAATGGGTGGTTTCGGACTTAAAAACCCACCACCGATGATCCTCA 4000
| || || |||| | |||| | || || ||| | || ||||| ||||| ||
Sbjct 15368709 TCCATCCCACTCCCAATATGGTAGACTTTCGATGTAAGCATCCCCCACCTATGATTCTGC 15368768
Query 4001 TCAAAAACACACCCGTTCCCGCCGATCCACCAACGACCTTCAAACCGACTCCGATGAACA 4060
| || || || |||||| | || || || ||||| || || | | || | ||
Sbjct 15368769 TTAAGAATACTCCCGTTTCTGCAGAACCTCCAACTACTTTTTCAGTCATCCCTGTTAAGT 15368828
Query 4061 GCTTCATCAGCGAATACAGTACCGGTCAGGTGACTGTAGAGATGCTGTGGGAGGTCCGGA 4120
||||| ||| |||| |||| |||||||| | ||||| || |||||| | |
Sbjct 15368829 CATTCATTAGCCAATATGGTACTGGTCAGGTAATAGTAGAAATAGATTGGGAGCT----A 15368884
Query 4121 AAG-AAGACTC---CAAGAGATGGAACCCGGAAATCCAGTTTAC 4160
||| |||| || ||| | ||||| || || || ||||||||
Sbjct 15368885 AAGTAAGAGTCAAGTAAGTGGTGGAATCCTGAGATTCAGTTTAC 15368928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14575507855025
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |