Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eptesicus_20fuscus_20[refseq_20GCF_5F000308155.1_202012-11-08] 6,789 sequences; 2,026,629,342 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq73 188 2e-44 >seq73 Length=7004857 Score = 188 bits (208), Expect = 2e-44 Identities = 330/479 (69%), Gaps = 19/479 (4%) Strand=Plus/Plus Query 2851 CCTCTAGTGTGGGATCATCTATCATGGCTGAAGGAGGTGGCGGCCCAGTGGGCGATGCAG 2910 |||| | | ||| ||| || ||||||| ||| | |||| ||||| ||||||| Sbjct 1720636 CCTCAAATTTGGCATCTAGTACAATGGCTGCAGGTGCTGGCAGCCCAATGGGCGACAATA 1720695 Query 2911 GCCAGGGTGCCGATGGAGTGGGCAATTCCTCCGGAAATTGGCATTGCGATTCCCAATGGC 2970 |||||| |||||||||||||| ||||| ||||| ||||||||||||||| ||| Sbjct 1720696 TGCAGGGTTCCGATGGAGTGGGCGCTTCCTTGGGAAACTGGCATTGCGATTCCACGTGGG 1720755 Query 2971 TGGAAAACGGAGTCGTCACTCGAACCACCCGAACCTGGGTCTTGCCCAGCTACAACAACC 3030 ||| | ||||| |||| | | ||| | ||||||||| |||| | |||| |||||| Sbjct 1720756 TGGGTGA--GAGTCATCACAAAATCTACCGGTACCTGGGTCCTGCCAACCTACGACAACC 1720813 Query 3031 ACCTGTACAAACGAATC--CAA----GGACCCAGCGGAGGCNNNNNNNNNNNNNNATTCT 3084 ||||| |||| |||| ||| ||| | | ||| | | || Sbjct 1720814 ACCTGCACAAGGAAATCAACAACTCTGGAGCGACTGGAAACAATGACACCCAG---TACT 1720870 Query 3085 TTGGATTCAGCACCCCCTGGGGATACTTTGACTACAATCGATTCCACTGCCACTTTTCCC 3144 ||||||||||| || | | ||||| | |||| | |||| || ||| |||||||||||| Sbjct 1720871 ATGGATTCAGCA-CCTGTAGAGATACCTGGACTTCCATCGGTTTCACGGCCACTTTTCCC 1720929 Query 3145 CGCGAGACTGGCAACGACTCATCAACAACAACTGGGGCATCCGTCCCAAAGCGATGCGCT 3204 | | ||| ||||||| |||||||| |||||||||| | || ||| | | || Sbjct 1720930 CTCAAGATTGGCAACATCTCATCAATAACAACTGGG------GACCAAAAAGGCTTGACT 1720983 Query 3205 TTAGACTCTTTAACATCCAGGTTAAAGAGGTCACGGTCCAAGACTTCAACACCACCATCG 3264 |||| || || || | || || |||| |||| | || ||| || | || |||| Sbjct 1720984 TTAG-CTTTTCCACGTTCAAGTCTAAGAAGTCATGACACATGACAACACAATGACTATCG 1721042 Query 3265 GCAACAACCTCACCAGTACGGTCCAGGTCTTTGCGGACAAGGACTACCAACTGCCGTAC 3323 || || ||||| || || ||||||| ||||||||| |||||| || || |||||| Sbjct 1721043 CTAATAATCTCACAAGCACAATCCAGGTGTTTGCGGACTCGGACTATCAGCTACCGTAC 1721101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14907692951715