Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eptesicus_20fuscus_20[refseq_20GCF_5F000308155.1_202012-11-08] 6,789 sequences; 2,026,629,342 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq73 165 2e-37 >seq73 Length=7004857 Score = 165 bits (182), Expect = 2e-37 Identities = 196/261 (75%), Gaps = 5/261 (2%) Strand=Plus/Plus Query 3822 TTTACTTACAGGGGCCTATTTGGGCTAAAATTCCAAATACAGATGGACATTTTCATCCTT 3881 || |||| ||||| || |||||| |||||| ||| | |||||||| ||||||| ||| | Sbjct 1722144 TTCACTTCCAGGGACCAATTTGGTCTAAAAGTCCTCACACAGATGGGCATTTTCCTCCCT 1722203 Query 3882 CTCCCAGAATGGGTGGTTTTGGATTAAAACATCCTCCGCCTATGATTCTGATCAAAAATA 3941 | || ||||||| |||||| | |||||||| || ||| ||||| || ||||||| Sbjct 1722204 CACCGCCGATGGGTGTATTTGGACTGAAACATCC-CCACCTCAAATTCTAATAAAAAATA 1722262 Query 3942 CACCAGTTCCTGCTGATCCTCCAACTACCTTCAATCCAATGCCACAG--ACTAGTTTCAT 3999 | ||||||||||| |||||||||| || | ||| | | || | | ||| || ||| Sbjct 1722263 CTCCAGTTCCTGCAAATCCTCCAACAACGTGCAACACCA-GCAAGATCAACTCGTG-CAT 1722320 Query 4000 TACTGAATACAGTACAGGACAAGTAACTGTTGAAATGTTGTGGGAGGTACAGAAAGAATC 4059 ||| | || ||||||||||| | |||||||| |||||| | || |||||||| Sbjct 1722321 CACTCAGTATTCCACAGGACAAGTGATGGTTGAAATCGAATGGGAGCTTCAAAAAGAATC 1722380 Query 4060 CTCCAAAAGATGGAATCCAGA 4080 ||||| |||||||||||||| Sbjct 1722381 ATCCAAGAGATGGAATCCAGA 1722401 Score = 96.9 bits (106), Expect = 1e-16 Identities = 297/451 (66%), Gaps = 29/451 (6%) Strand=Plus/Plus Query 2600 ATGGCTACAGGAGGAGGCGGTCCGATGGCAGACGATAACCAGGGCGCCGAGGGAGTGGGT 2659 |||||| |||| | ||| | || |||| ||| ||| ||||| |||| |||||||| Sbjct 1720659 ATGGCTGCAGGTGCTGGCAGCCCAATGGGCGACAATATGCAGGGTTCCGATGGAGTGGGC 1720718 Query 2660 AATTCCTCAGGTGATTGGCATTGCGATACCAAGTGGATGGGAGACCACGTCATTACAAAG 2719 ||||| || | |||||||||||| ||| |||| |||| || ||||| ||||| Sbjct 1720719 GCTTCCTTGGGAAACTGGCATTGCGATTCCACGTGGGTGGGTGA--GAGTCATCACAAAA 1720776 Query 2720 TCAACCAGAACTTGGGTGCTCCCCACTTACGGGAATCATCTCTACGGGCCTATCAACTTT 2779 || ||| | || ||||| || || || |||| || || || || | ||||| Sbjct 1720777 TCTACCGGTACCTGGGTCCTGCCAACCTACGACAACCACCTGCACAAGGAAATCAA---- 1720832 Query 2780 GACGGCACCACAGGTTCG---GGTGCTAATG-CAGCC--TATGCAGGATACAAGACTCCC 2833 || | | || || || |||| || || || |||| || || | Sbjct 1720833 -----CAACTCTGGAGCGACTGGAAACAATGACACCCAGTACTATGGATTCAGCAC-CTG 1720886 Query 2834 TGGGGGTACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCCCGAGACTGGCAAAGA 2893 | | | ||| | |||||| |||| || || ||||||| ||||| | ||| |||||| Sbjct 1720887 TAGAGATACCTGGACTTCCATCGGTTTCACGGCCACTTTTCCCCTCAAGATTGGCAACAT 1720946 Query 2894 CTCATCAACAACCACACAGGCATCAGGCCGAAAGGACTCAAAATCAAAGTCTTTAACGTC 2953 |||||||| ||| || || | || ||| | || | | | | || |||| Sbjct 1720947 CTCATCAATAAC--AACTGG----GGACCAAAAAGGCT-TGACTTTAGCTTTTCCACGTT 1720999 Query 2954 CAAGTCAAAGAAGTTACAACACAAGATTCAACGAAA--ACAATTGCCAACAATCTCACCA 3011 |||||| ||||||| | ||||| || |||| || || || || || |||||||| | Sbjct 1721000 CAAGTCTAAGAAGTCATGACACATGA--CAACACAATGACTATCGCTAATAATCTCACAA 1721057 Query 3012 GCACCGTACAGATCTTTGCGGACGAGAACTA 3042 |||| | ||| | ||||||||| | |||| Sbjct 1721058 GCACAATCCAGGTGTTTGCGGACTCGGACTA 1721088 Score = 78.8 bits (86), Expect = 3e-11 Identities = 101/139 (73%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 1269 AAGAACTTTGGCAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACTAC---CGGCAAA 1325 || || ||||| || |||||||| |||||||||| |||||| | || || ||| || Sbjct 1719178 AAAAAGTTTGGGAAAAGAAACACTATCTGGCTGTTTGGTCCTTCCACAACGACCGGAAAG 1719237 Query 1326 ACCATCATCGCTCAAGCTATTGCACATGCTGTTAAACTGTTTGCTGGTGTTAATTGGACT 1385 || | | | || |||| || ||||||||| | | | || ||||| |||| || Sbjct 1719238 ACAAACTTTGCAGAAGCCATCTTGCATGCTGTTCCATTTTATGGATGTGTTCATTGAACC 1719297 Query 1386 AATGAAAACTTTCCCTTCT 1404 |||||||||||||| |||| Sbjct 1719298 AATGAAAACTTTCCATTCT 1719316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14069355206845