Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eptesicus_20fuscus_20[refseq_20GCF_5F000308155.1_202012-11-08] 6,789 sequences; 2,026,629,342 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq73 260 4e-66 >seq73 Length=7004857 Score = 260 bits (288), Expect = 4e-66 Identities = 412/584 (71%), Gaps = 20/584 (3%) Strand=Plus/Plus Query 2698 CAGCAGCGCCCTCTGGTGTGGGACCTAATACAATGGCTGCAGGCGGTGGCGCACCAATGG 2757 ||| || | |||| | ||| | ||| ||||||||||||||| | |||| ||||||| Sbjct 1720627 CAGTAGTGTCCTCAAATTTGGCATCTAGTACAATGGCTGCAGGTGCTGGCAGCCCAATGG 1720686 Query 2758 CAGACAATAACGAAGGCGCCGACGGAGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATT 2817 ||||||| | || |||| |||||||| ||||| |||||| ||||||||||||| Sbjct 1720687 GCGACAATATGCAGGGTTCCGATGGAGTGGGCGCTTCCTTGGGAAACTGGCATTGCGATT 1720746 Query 2818 CCACATGGCTGGGCGACAGAGTCATCACCACCAGCACCCGAACCTGGGCCCTGCCCACCT 2877 |||| ||| |||| | ||||||||||| | ||| | ||||||| |||||| |||| Sbjct 1720747 CCACGTGGGTGGGTG--AGAGTCATCACAAAATCTACCGGTACCTGGGTCCTGCCAACCT 1720804 Query 2878 ACAACAACCACCTCTACAAGCAAATCTCCAACGGGACATCGGGAG-GA--GCCACCAACG 2934 || |||||||||| ||||| ||||| |||| || |||| || | | ||| | Sbjct 1720805 ACGACAACCACCTGCACAAGGAAATCAACAAC------TCTGGAGCGACTGGAAACAATG 1720858 Query 2935 ACAACACCTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACT 2994 ||| | |||| || | ||||| || | | | || | ||||| | | || ||| Sbjct 1720859 ACACCCAGTACTATGGATTCAGCA-CCTGTAGAGATACCTGGACTTCCATCGGTTTCACG 1720917 Query 2995 GCCACTTTTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCA 3054 |||||||||| || | || ||||| | |||||||| |||||||||||| || | Sbjct 1720918 GCCACTTTTCCCCTCAAGATTGGCAACATCTCATCAATAACAACTGGGGA------CCAA 1720971 Query 3055 AGAGACTCAGCTTCAAGCTCTTCAACATCCAGGTCAAGGAGGTCACGCAGAATGAAGGCA 3114 | || || ||| |||| ||| || | || ||| | || |||| | |||| || Sbjct 1720972 AAAGGCTTGACTT-TAGCTTTTCCACGTTCAAGTCTAAGAAGTCATGACACATGACAACA 1721030 Query 3115 CCAAGACCATCGCCAATAACCTCACCAGCACCATCCAGGTGTTTACGGACTCGGAGTACC 3174 | | ||| ||||| ||||| ||||| ||||| |||||||||||| |||||||||| || | Sbjct 1721031 CAATGACTATCGCTAATAATCTCACAAGCACAATCCAGGTGTTTGCGGACTCGGACTATC 1721090 Query 3175 AGCTGCCGTACGTTCTC-GGCTCTGCCCACCAGGGCTGCCTGCCTCCGTTCCCGGCGGAC 3233 |||| |||||| | || || | | | || ||||||| ||| || || | Sbjct 1721091 AGCTACCGTACCACAACGGGGAACGCACTCAAAGGAACACTGCCTCTGTTTCCAGCAGGT 1721150 Query 3234 GTGTTCATGATTCCCCAGTACGGCTACCTAACACTCAACAACGG 3277 || |||||| ||| ||| | || || ||||| |||||||| || Sbjct 1721151 GTATTCATGGCTCCACAGCATGGATATCTAACTCTCAACAATGG 1721194 Score = 196 bits (216), Expect = 1e-46 Identities = 363/532 (68%), Gaps = 27/532 (5%) Strand=Plus/Plus Query 1196 AAAAAGTTCGGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCAC---CGGCAAG 1252 |||||||| |||||| | ||||| |||||||||||||| || |||| || ||| ||| Sbjct 1719178 AAAAAGTTTGGGAAAAGAAACACTATCTGGCTGTTTGGTCCTTCCACAACGACCGGAAAG 1719237 Query 1253 ACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACC 1312 || ||| |||| ||||||||| || || || || || || || || || | || ||| Sbjct 1719238 ACAAACTTTGCAGAAGCCATCTTGCATGCTGTTCCATTTTATGGATGTGTTCATTGAACC 1719297 Query 1313 AATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGC 1372 ||||| |||||||| ||| |||||||| || |||| |||| Sbjct 1719298 AATGAAAACTTTCCATTCTATGATTGCATC---AAGA---------------AGGA---- 1719335 Query 1373 AAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGC 1432 || ||||| || ||||| || ||||| || |||| |||||||| || || || | Sbjct 1719336 AAAATGACTGCTAAGGTTGTCGAGTCTGCAAAGGTCATTCTCGATGGAAGTCCTGTTTGT 1719395 Query 1433 GTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCC 1492 | ||||||||||||||||| || |||| || | || || ||||| || || || Sbjct 1719396 ATTGACCAAAAGTGCAAGTCCTCTCAACAGACTGATCTGACACCAGTGATTGTGACTTCA 1719455 Query 1493 AACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCT 1552 || || |||||||| || || || || || || | || ||||| || || ||||| Sbjct 1719456 AATACTAACATGTGTGCTGTCATGGATGGAAATTCAATAACATTCGAACATCAACAGCCA 1719515 Query 1553 CTCCAGGACCGGATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAG 1612 | | || | || || || || ||||| | ||| || || || |||||||| ||| Sbjct 1719516 TTGGAAGATCAAATATTCAAATTTGAACTTGTCTGCCAACTCGATCATGACTTTGGGAAG 1719575 Query 1613 GTGACAAAGCAGGAAGTCAAAGAGTTCTTCCGCTGGGCCAGTGATCACGTGACCGAGGTG 1672 ||||| || ||||||||||||| |||||| | | | | | || || Sbjct 1719576 ACCACAAAAACAGAGATCAAAGAGTTCTTTGCCTGGGCAAAGGCCAATGAGTGTGATGTC 1719635 Query 1673 GCGCATGAGTTTTACGTCAGAAAGGGCGGA-GCCAGCAAAAGACCCGCCCCC 1723 ||| ||||||| | || || ||||| ||| || | |||||| |||||||| Sbjct 1719636 ACGCGTGAGTTTAATGTTAG-AAGGGTGGAGGCTAAGAAAAGATCCGCCCCC 1719686 Score = 141 bits (156), Expect = 3e-30 Identities = 226/317 (71%), Gaps = 8/317 (3%) Strand=Plus/Plus Query 3908 AACTGTCAACAGCCAGGGGGCCTTACCCGGTATGGTCTGGCAGAACCGGGACGTGTACCT 3967 || |||||| ||| || ||| | || || ||||| ||||| | | || || || | Sbjct 1722092 AAATGTCAATCACCAAGGAGCCGTTCC-GGAATGGTATGGCAAGATCATGAAGTTCACTT 1722150 Query 3968 GCAGGGTCCCATCTGGGCCAAGATTCCTCACACGGACGG-CAACTTCCACCCGTCTCCGC 4026 ||||| || || ||| | || | ||||||||| || || || |||| ||| || |||| Sbjct 1722151 CCAGGGACCAATTTGGTCTAAAAGTCCTCACACAGATGGGCATTTTCCTCCC-TCACCGC 1722209 Query 4027 TGATGGGCGGCTTTGGCCTGAAACATCCTCCGCCTCAGATCCTGATCAAGAACACGCCTG 4086 |||||| | ||||| ||||||||||| || ||||| || || || || || || || | Sbjct 1722210 CGATGGGTGTATTTGGACTGAAACATCC-CCACCTCAAATTCTAATAAAAAATACTCCAG 1722268 Query 4087 TACCTGCGGATCCTCCGACCACCTTCAAC--CAGTCAAAGCTGAACTCTTTCATCACGCA 4144 | ||||| ||||||| || || | |||| ||| ||| | ||||| | |||||| || Sbjct 1722269 TTCCTGCAAATCCTCCAACAACGTGCAACACCAGC--AAGATCAACTCGTGCATCACTCA 1722326 Query 4145 ATACAGCACCGGACAGGTCAGCGTGGAAATTGAATGGGAGCTGCAGAAGGAAAACAGCAA 4204 || ||| ||||| || | || ||||| ||||||||||| || || ||| ||| Sbjct 1722327 GTATTCCACAGGACAAGTGATGGTTGAAATCGAATGGGAGCTTCAAAAAGAATCATCCAA 1722386 Query 4205 GCGCTGGAACCCCGAGA 4221 | | ||||| || |||| Sbjct 1722387 GAGATGGAATCCAGAGA 1722403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13944564473830