Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq49 172 2e-39 >seq49 Length=1158978 Score = 172 bits (190), Expect = 2e-39 Identities = 262/372 (70%), Gaps = 1/372 (0%) Strand=Plus/Plus Query 1288 AGTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACA 1347 ||||| |||| | ||| |||||||| | | | ||||| || ||| | ||||| | || Sbjct 531143 AGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCA 531202 Query 1348 TCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGA 1407 ||| |||||| || |||| ||||||| || || || || | ||||||||| ||||||| Sbjct 531203 TCGTGGAGGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGA 531262 Query 1408 ACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGA 1467 ||||||| ||||| ||||| || || ||||||||||| ||||||||||| || ||||||| Sbjct 531263 ACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGA 531322 Query 1468 CCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGC-GCGTGGAC 1526 | || | || ||||| || ||||||||| | || || |||| | || || Sbjct 531323 CTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGAT 531382 Query 1527 CAGAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCTCCAACACC 1586 || || || || || | || || || || || || || | | ||| || || Sbjct 531383 CAAAACTGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACA 531442 Query 1587 AACATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACACCAGCAGCCGTTGCAA 1646 | | ||| || ||| |||| |||||| || ||||| ||||| || | || ||| | Sbjct 531443 TATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAACCTTTGGAG 531502 Query 1647 GACCGGATGTTC 1658 || | |||||| Sbjct 531503 GAAAGAATGTTC 531514 Score = 149 bits (164), Expect = 2e-32 Identities = 244/345 (71%), Gaps = 19/345 (6%) Strand=Plus/Plus Query 2872 TCCTCGGGAAATTGGCATTGCGATTCCACATGG-ATGGGCGACAGAGTCATCACCACCAG 2930 ||||| |||||||||||| | ||||| |||| | ||| | |||||||||| | Sbjct 532817 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATC----TCATCACCACTCG 532871 Query 2931 ---CACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAACAAATTTCCAG 2987 |||| |||| |||| || ||| |||| ||||| | |||||||| || ||| || Sbjct 532872 TTCCACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATTAA-AG 532930 Query 2988 CCAATCAGGAGCCTCGAACGACAATCACTACTTTGGCTACAGCACCCCTTGGGGGTATTT 3047 |||| ||||| |||| |||||| || |||||||||||| ||| || | Sbjct 532931 GCAAT-----GCCTCT---GACATGTCCTACTTGGGTTACAGCACCCCT-GGGCCTACCT 532981 Query 3048 TGACTTCAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAAAGACTCATCAACAA 3107 ||||||||||||||||| ||||||| || || ||||| || | ||||||||||| Sbjct 532982 CGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAA 533041 Query 3108 CAACTGGGGATTCCGACCCAAGAGACTCAACTTCAAGCTCTTTAACATTCAAGTCAAAGA 3167 | ||||||| ||||||| ||| | |||| | || ||||| ||||| || || Sbjct 533042 CTACTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGA 533101 Query 3168 GGTCACGCAGAATGACGGTACGACGACGATTGCCAATAACCTTAC 3212 ||||| | || | || || | ||| |||||||||||||| || Sbjct 533102 GGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 533146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14851502224380