Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_001401.2
Length=4679
Score E
Sequences producing significant alignments: (Bits) Value
seq49 172 2e-39
>seq49
Length=1158978
Score = 172 bits (190), Expect = 2e-39
Identities = 262/372 (70%), Gaps = 1/372 (0%)
Strand=Plus/Plus
Query 1288 AGTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACA 1347
||||| |||| | ||| |||||||| | | | ||||| || ||| | ||||| | ||
Sbjct 531143 AGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCA 531202
Query 1348 TCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGA 1407
||| |||||| || |||| ||||||| || || || || | ||||||||| |||||||
Sbjct 531203 TCGTGGAGGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGA 531262
Query 1408 ACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGA 1467
||||||| ||||| ||||| || || ||||||||||| ||||||||||| || |||||||
Sbjct 531263 ACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGA 531322
Query 1468 CCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGC-GCGTGGAC 1526
| || | || ||||| || ||||||||| | || || |||| | || ||
Sbjct 531323 CTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGAT 531382
Query 1527 CAGAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCTCCAACACC 1586
|| || || || || | || || || || || || || | | ||| || ||
Sbjct 531383 CAAAACTGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACA 531442
Query 1587 AACATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACACCAGCAGCCGTTGCAA 1646
| | ||| || ||| |||| |||||| || ||||| ||||| || | || ||| |
Sbjct 531443 TATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAACCTTTGGAG 531502
Query 1647 GACCGGATGTTC 1658
|| | ||||||
Sbjct 531503 GAAAGAATGTTC 531514
Score = 149 bits (164), Expect = 2e-32
Identities = 244/345 (71%), Gaps = 19/345 (6%)
Strand=Plus/Plus
Query 2872 TCCTCGGGAAATTGGCATTGCGATTCCACATGG-ATGGGCGACAGAGTCATCACCACCAG 2930
||||| |||||||||||| | ||||| |||| | ||| | |||||||||| |
Sbjct 532817 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATC----TCATCACCACTCG 532871
Query 2931 ---CACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAACAAATTTCCAG 2987
|||| |||| |||| || ||| |||| ||||| | |||||||| || ||| ||
Sbjct 532872 TTCCACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATTAA-AG 532930
Query 2988 CCAATCAGGAGCCTCGAACGACAATCACTACTTTGGCTACAGCACCCCTTGGGGGTATTT 3047
|||| ||||| |||| |||||| || |||||||||||| ||| || |
Sbjct 532931 GCAAT-----GCCTCT---GACATGTCCTACTTGGGTTACAGCACCCCT-GGGCCTACCT 532981
Query 3048 TGACTTCAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAAAGACTCATCAACAA 3107
||||||||||||||||| ||||||| || || ||||| || | |||||||||||
Sbjct 532982 CGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAA 533041
Query 3108 CAACTGGGGATTCCGACCCAAGAGACTCAACTTCAAGCTCTTTAACATTCAAGTCAAAGA 3167
| ||||||| ||||||| ||| | |||| | || ||||| ||||| || ||
Sbjct 533042 CTACTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGA 533101
Query 3168 GGTCACGCAGAATGACGGTACGACGACGATTGCCAATAACCTTAC 3212
||||| | || | || || | ||| |||||||||||||| ||
Sbjct 533102 GGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 533146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14851502224380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |