Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq49 334 2e-88 >seq49 Length=1158978 Score = 334 bits (370), Expect = 2e-88 Identities = 355/465 (76%), Gaps = 5/465 (1%) Strand=Plus/Plus Query 1509 GAGTTCAACAAAAGAAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAAC 1568 ||||||||||| | |||||||| ||| ||||| ||||||| |||||| | ||||| | | Sbjct 531142 GAGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGC 531201 Query 1569 ATTGCAGAAGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAG 1628 || | || |||||||||| |||||| || || |||||||||| ||||||||||||||| Sbjct 531202 ATCGTGGAGGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAG 531261 Query 1629 AACTTTCCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATG 1688 ||||||||||| ||||| || || ||||| ||| |||||||||||||||| ||||| ||| Sbjct 531262 AACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATG 531321 Query 1689 ACTAATAAGGTTGTTGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGT-CCGGGTAGA 1747 |||| ||| |||| || ||||| ||||| |||||||| |||| ||||| | |||| || Sbjct 531322 ACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGA 531381 Query 1748 CCAGAAATGTAAAGGATCTGTTTGTATTGAACCTACTCCTGTAATTATTACTAGTAATAC 1807 || || |||||||| ||||| |||||||| || |||||| ||||||| |||||||| Sbjct 531382 TCAAAACTGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATAC 531441 Query 1808 TGATATGTGTATGATTGTTGATGGCAACTCTACTACAATGGAACATAGAATACCATTAGA 1867 ||| |||| | |||||||| ||| ||||| ||||||||| ||| || || Sbjct 531442 ATATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAACCTTTGGA 531501 Query 1868 GGAGCGTATGTTTCAAATTGTCCTATCACA--TAAATTGGAGCCTTCTTTTGGAAAAATT 1925 ||| | ||||| | || | ||||| ||| | || | |||||| ||||| Sbjct 531502 GGAAAGAATGTTCC--TTTTTAGGTTCACAGTAAAACTCAGGCATGATTTTGGGAAAATA 531559 Query 1926 TCTAAAAAAGAAGTCAGAGAATTTTTCAAATGGGCCAATGACAAT 1970 |||| || | |||||||||||| | |||| | |||||||| Sbjct 531560 AGTAAATGGGAGATAAGAGAATTTTTCCAGTGGGGCCATGACAAT 531604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16217047325545