Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq49 172 2e-39 >seq49 Length=1158978 Score = 172 bits (190), Expect = 2e-39 Identities = 248/344 (72%), Gaps = 17/344 (5%) Strand=Plus/Plus Query 2878 TCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGGCGACAGAGTCATCACCACCAG- 2936 |||||||||||||||||| | ||||| ||||||| || | |||||||||| | Sbjct 532817 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATC---TCATCACCACTCGT 532872 Query 2937 --CACCAGAACCTGGGCCCTGCCCACTTACAACAACCATCTCTACAAGCAAATCTCCAGC 2994 ||||||||| |||| || ||| | || ||||| ||||||||||||| || | || Sbjct 532873 TCCACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGAT-TAAAGG 532931 Query 2995 CAATCAGGAGCTTCAAACGACAACCACTACTTTGGCTACAGCACCCCTTGGGGGTATTTT 3054 |||| || || |||| |||||| || |||||||||||| ||| || | Sbjct 532932 CAAT-----GCCTCT---GACATGTCCTACTTGGGTTACAGCACCCCT-GGGCCTACCTC 532982 Query 3055 GACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATTAACAAC 3114 ||||| ||||||||||| ||||||| || || ||||| ||||| ||||| |||||| Sbjct 532983 GACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAAC 533042 Query 3115 AACTGGGGATTCCGGCCCAAGAAACTCAGCTTCAAGCTCTTCAACATCCAAGTTAGAGGG 3174 ||||||| |||| || ||| || |||| | |||||||| ||||||| | | Sbjct 533043 TACTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAG 533102 Query 3175 GTCACGCAGAACGATGGCACGACGACTATTGCCAATAACCTTAC 3218 |||| | || | ||||| | ||| |||||||||||||| || Sbjct 533103 GTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 533146 Score = 167 bits (184), Expect = 7e-38 Identities = 353/518 (68%), Gaps = 9/518 (2%) Strand=Plus/Plus Query 1142 CCTGACAAAGACGGCTCCGGACTACCTGGTGGGCA-GCAACCCGCCGGAGGACATTACCA 1200 |||||| ||| |||| ||||||||| | |||| || || | ||| ||||| |||| Sbjct 531000 CCTGACGAAGTCGGCCGAAGACTACCTGCTAGGCAAGCTTCCAGTCGG-GGACACCACCA 531058 Query 1201 AAAATCGGATCTACCAAATCCTGGAGCTGAACGGGTACGATCCGCAGTACGCGGCCTCCG 1260 | || | | | |||| | || |||| ||||||| || | || | ||| | Sbjct 531059 AGAACAAGGTGTTCCAACGTTTCCAGGTGAATCGGTACGA-CCAC-GT-CTTGGCAGCGA 531115 Query 1261 TCTTCCTGG---GCTGGGCGCAAAAGAAGTTCGGGAAGAGGAACACCATCTGGCTCTTTG 1317 | |||| | ||||||| | | ||||| ||| | ||| |||||||| ||| Sbjct 531116 ACATCCTAGTTCGCTGGGCCCGGTGGGAGTTCAACAAGTGCAACGCCATCTGGTTCTACA 531175 Query 1318 GGCCGGCCACGACGGGTAAAACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCT 1377 | || || || || | || || | ||||| ||| || || |||| || ||||| || | Sbjct 531176 GACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATTGCCCGTGCTGTGCCATTTT 531235 Query 1378 ACGGCTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGG 1437 | ||||| | ||||||||| |||||||||||||| ||||| || || || || ||||||| Sbjct 531236 ATGGCTGTGGAAACTGGACTAATGAGAACTTTCCTTTCAATGACTGGGTAGATAAGATGG 531295 Query 1438 TGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTC 1497 |||| ||||||||||| || |||||||| || | || ||| || || |||||| Sbjct 531296 TGATTTGGTGGGAGGAAGGAAAGATGACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTT 531355 Query 1498 TGGGCGGAAGCAAGGTGC-GCGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGAACCC 1556 |||| || |||| | || || ||||| || || || | || || ||||| Sbjct 531356 TGGGTGGGTTGGCTGTGCGGGGTTGATCAAAACTGTAAAGGTTCTGTGCAAATTGAACCA 531415 Query 1557 ACTCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACC 1616 || || || | | ||| || || | | ||| || ||| |||| ||||||||||| Sbjct 531416 ACGCCTGTACTTATTACCAGTAATACATATAAGTGTGCTGTGGTTGATGGGAACAGCACT 531475 Query 1617 ACCTTCGAGCATCAGCAGCCGCTGCAGGACCGGATGTT 1654 ||||| || ||| || | || || |||| | ||||| Sbjct 531476 ACCTTGGAACATAAGGAACCTTTGGAGGAAAGAATGTT 531513 Score = 143 bits (158), Expect = 8e-31 Identities = 200/277 (72%), Gaps = 5/277 (2%) Strand=Plus/Plus Query 4039 GACGTGTACCTTCAAGGACCTATCTGGGCAAAGATTCCTCACACGGATGGACACTTTCAT 4098 ||| | || || || || ||||| ||||| || |||||| |||| ||||| | ||||| Sbjct 533939 GACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAATTTTCAG 533998 Query 4099 CCTTCTCCTCTGATGGGAGGCTTTGGACTGAAACATCCGCCTCCTCAAATCATGATCAAA 4158 ||| |||| |||||||||||||| |||||| | |||| || || ||| Sbjct 533999 CCTCATCCTAACATGGGAGGCTTTGGGTGCAAACATTCACCTCTGATGATTCTGCAGAAA 534058 Query 4159 AATACTCCGGTACCGGCAAATCCTCCGACGACTTTCA--GCCCGGCCAAGTTTGCTTCAT 4216 |||||||| || || ||| | ||||| || | |||| | ||| | | | || | Sbjct 534059 AATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTATTAAG--TC-T 534115 Query 4217 TTATCACTCAGTACTCCACTGGACAGGTCAGCGTGGAAATTGAGTGGGAGCTACAGAAAG 4276 |||| | |||||| |||||||| ||||| | ||||||||||| ||||||| | | ||| Sbjct 534116 TTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCGAAAATAAG 534175 Query 4277 AAAACAGCAAACGTTGGAATCCAGAGATTCAGTACAC 4313 || ||||||||| |||||||||| ||| || | ||| Sbjct 534176 AATCCAGCAAACGCTGGAATCCAGCGATCCAATTCAC 534212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15001808125445