Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_001729.1
Length=4726
Score E
Sequences producing significant alignments: (Bits) Value
seq49 172 2e-39
>seq49
Length=1158978
Score = 172 bits (190), Expect = 2e-39
Identities = 248/344 (72%), Gaps = 17/344 (5%)
Strand=Plus/Plus
Query 2878 TCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGGCGACAGAGTCATCACCACCAG- 2936
|||||||||||||||||| | ||||| ||||||| || | |||||||||| |
Sbjct 532817 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATC---TCATCACCACTCGT 532872
Query 2937 --CACCAGAACCTGGGCCCTGCCCACTTACAACAACCATCTCTACAAGCAAATCTCCAGC 2994
||||||||| |||| || ||| | || ||||| ||||||||||||| || | ||
Sbjct 532873 TCCACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGAT-TAAAGG 532931
Query 2995 CAATCAGGAGCTTCAAACGACAACCACTACTTTGGCTACAGCACCCCTTGGGGGTATTTT 3054
|||| || || |||| |||||| || |||||||||||| ||| || |
Sbjct 532932 CAAT-----GCCTCT---GACATGTCCTACTTGGGTTACAGCACCCCT-GGGCCTACCTC 532982
Query 3055 GACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATTAACAAC 3114
||||| ||||||||||| ||||||| || || ||||| ||||| ||||| ||||||
Sbjct 532983 GACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAAC 533042
Query 3115 AACTGGGGATTCCGGCCCAAGAAACTCAGCTTCAAGCTCTTCAACATCCAAGTTAGAGGG 3174
||||||| |||| || ||| || |||| | |||||||| ||||||| | |
Sbjct 533043 TACTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAG 533102
Query 3175 GTCACGCAGAACGATGGCACGACGACTATTGCCAATAACCTTAC 3218
|||| | || | ||||| | ||| |||||||||||||| ||
Sbjct 533103 GTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 533146
Score = 167 bits (184), Expect = 7e-38
Identities = 353/518 (68%), Gaps = 9/518 (2%)
Strand=Plus/Plus
Query 1142 CCTGACAAAGACGGCTCCGGACTACCTGGTGGGCA-GCAACCCGCCGGAGGACATTACCA 1200
|||||| ||| |||| ||||||||| | |||| || || | ||| ||||| ||||
Sbjct 531000 CCTGACGAAGTCGGCCGAAGACTACCTGCTAGGCAAGCTTCCAGTCGG-GGACACCACCA 531058
Query 1201 AAAATCGGATCTACCAAATCCTGGAGCTGAACGGGTACGATCCGCAGTACGCGGCCTCCG 1260
| || | | | |||| | || |||| ||||||| || | || | ||| |
Sbjct 531059 AGAACAAGGTGTTCCAACGTTTCCAGGTGAATCGGTACGA-CCAC-GT-CTTGGCAGCGA 531115
Query 1261 TCTTCCTGG---GCTGGGCGCAAAAGAAGTTCGGGAAGAGGAACACCATCTGGCTCTTTG 1317
| |||| | ||||||| | | ||||| ||| | ||| |||||||| |||
Sbjct 531116 ACATCCTAGTTCGCTGGGCCCGGTGGGAGTTCAACAAGTGCAACGCCATCTGGTTCTACA 531175
Query 1318 GGCCGGCCACGACGGGTAAAACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCT 1377
| || || || || | || || | ||||| ||| || || |||| || ||||| || |
Sbjct 531176 GACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATTGCCCGTGCTGTGCCATTTT 531235
Query 1378 ACGGCTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGG 1437
| ||||| | ||||||||| |||||||||||||| ||||| || || || || |||||||
Sbjct 531236 ATGGCTGTGGAAACTGGACTAATGAGAACTTTCCTTTCAATGACTGGGTAGATAAGATGG 531295
Query 1438 TGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTC 1497
|||| ||||||||||| || |||||||| || | || ||| || || ||||||
Sbjct 531296 TGATTTGGTGGGAGGAAGGAAAGATGACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTT 531355
Query 1498 TGGGCGGAAGCAAGGTGC-GCGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGAACCC 1556
|||| || |||| | || || ||||| || || || | || || |||||
Sbjct 531356 TGGGTGGGTTGGCTGTGCGGGGTTGATCAAAACTGTAAAGGTTCTGTGCAAATTGAACCA 531415
Query 1557 ACTCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACC 1616
|| || || | | ||| || || | | ||| || ||| |||| |||||||||||
Sbjct 531416 ACGCCTGTACTTATTACCAGTAATACATATAAGTGTGCTGTGGTTGATGGGAACAGCACT 531475
Query 1617 ACCTTCGAGCATCAGCAGCCGCTGCAGGACCGGATGTT 1654
||||| || ||| || | || || |||| | |||||
Sbjct 531476 ACCTTGGAACATAAGGAACCTTTGGAGGAAAGAATGTT 531513
Score = 143 bits (158), Expect = 8e-31
Identities = 200/277 (72%), Gaps = 5/277 (2%)
Strand=Plus/Plus
Query 4039 GACGTGTACCTTCAAGGACCTATCTGGGCAAAGATTCCTCACACGGATGGACACTTTCAT 4098
||| | || || || || ||||| ||||| || |||||| |||| ||||| | |||||
Sbjct 533939 GACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAATTTTCAG 533998
Query 4099 CCTTCTCCTCTGATGGGAGGCTTTGGACTGAAACATCCGCCTCCTCAAATCATGATCAAA 4158
||| |||| |||||||||||||| |||||| | |||| || || |||
Sbjct 533999 CCTCATCCTAACATGGGAGGCTTTGGGTGCAAACATTCACCTCTGATGATTCTGCAGAAA 534058
Query 4159 AATACTCCGGTACCGGCAAATCCTCCGACGACTTTCA--GCCCGGCCAAGTTTGCTTCAT 4216
|||||||| || || ||| | ||||| || | |||| | ||| | | | || |
Sbjct 534059 AATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTATTAAG--TC-T 534115
Query 4217 TTATCACTCAGTACTCCACTGGACAGGTCAGCGTGGAAATTGAGTGGGAGCTACAGAAAG 4276
|||| | |||||| |||||||| ||||| | ||||||||||| ||||||| | | |||
Sbjct 534116 TTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCGAAAATAAG 534175
Query 4277 AAAACAGCAAACGTTGGAATCCAGAGATTCAGTACAC 4313
|| ||||||||| |||||||||| ||| || | |||
Sbjct 534176 AATCCAGCAAACGCTGGAATCCAGCGATCCAATTCAC 534212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15001808125445
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |