Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_001829.1
Length=4767
Score E
Sequences producing significant alignments: (Bits) Value
seq49 141 3e-30
>seq49
Length=1158978
Score = 141 bits (156), Expect = 3e-30
Identities = 282/407 (69%), Gaps = 23/407 (6%)
Strand=Plus/Plus
Query 2970 CACCAGAACCTGGGTCTTGCCCACCTACAACAACCACCTCTACAAGC-GACTCGGAGAGA 3028
||||||||| ||||| | ||| |||| ||||| | |||||||||| || | | ||
Sbjct 532875 CACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATT---AAAGG 532931
Query 3029 GCCTGCAGTCCAACA---CCTACAACGGATTCTCCACCCCCTGGGGATACTTTGACTTCA 3085
||| || ||| ||||| || | | |||||| |||| ||| | |||||||
Sbjct 532932 CAATGCC-TCTGACATGTCCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCA 532989
Query 3086 ACCGCTTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGG 3145
|| | ||||| ||||||| || || ||||| ||||| |||||||||||| ||||||
Sbjct 532990 ACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTACTGGG 533049
Query 3146 GCATGCGACCCAAAGCCATG-CGGGTCAAAATCTTCAACATCCAGGTCAAGGAGGTCACG 3204
|||| ||| |||||| | || | ||||||| |||||||| || || |||||||||| |
Sbjct 533050 GCATCCGA-CCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATG 533108
Query 3205 ACGTCGAACGGC---GAGACAACGGTGGCTAATAACCTTACCAGCACGGTTCAGATCTTT 3261
| | ||| |||||| | || |||||||| || || | ||||| |||
Sbjct 533109 GAGGCAGCAGGCACAAAGACAA---TTGCCAATAACCTAACGTCAACCATCCAGATTTTT 533165
Query 3262 GCGGACTCGTCGTACGAACTGCCGTACGTGATGG---ATGCGGGTCAAGAGGGCAGCCTG 3318
|| || | || | ||||| || ||||| | |||| | ||||| || ||
Sbjct 533166 GCAGATGACACACACCAGCTGCCATATGTGATTGGAAATGCCACT---GAGGGGTGCTTG 533222
Query 3319 CCTCCTTTTCCCAACGACGTCTTTATGGTGCCCCAGTACGGCTACTG 3365
|| |||||||| || || |||||| |||| |||||| | |||||
Sbjct 533223 CCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGTACTG 533269
Score = 136 bits (150), Expect = 1e-28
Identities = 162/220 (74%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 1339 AGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACA 1398
||||| ||| | ||| |||||||| ||| | || || || || | || || | ||
Sbjct 531143 AGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCA 531202
Query 1399 TCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGA 1458
||| ||| || || |||| || ||||| || || ||||| | |||||||| |||||||
Sbjct 531203 TCGTGGAGGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGA 531262
Query 1459 ACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1518
||||||| ||||| || || || || ||||||||||| ||||||||||| || |||||||
Sbjct 531263 ACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGA 531322
Query 1519 CGGCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGGCGG 1558
| || | |||||| || || ||||| |||| ||
Sbjct 531323 CTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGG 531362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15132926039140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |