Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq49 141 3e-30 >seq49 Length=1158978 Score = 141 bits (156), Expect = 3e-30 Identities = 282/407 (69%), Gaps = 23/407 (6%) Strand=Plus/Plus Query 2970 CACCAGAACCTGGGTCTTGCCCACCTACAACAACCACCTCTACAAGC-GACTCGGAGAGA 3028 ||||||||| ||||| | ||| |||| ||||| | |||||||||| || | | || Sbjct 532875 CACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATT---AAAGG 532931 Query 3029 GCCTGCAGTCCAACA---CCTACAACGGATTCTCCACCCCCTGGGGATACTTTGACTTCA 3085 ||| || ||| ||||| || | | |||||| |||| ||| | ||||||| Sbjct 532932 CAATGCC-TCTGACATGTCCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCA 532989 Query 3086 ACCGCTTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGG 3145 || | ||||| ||||||| || || ||||| ||||| |||||||||||| |||||| Sbjct 532990 ACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTACTGGG 533049 Query 3146 GCATGCGACCCAAAGCCATG-CGGGTCAAAATCTTCAACATCCAGGTCAAGGAGGTCACG 3204 |||| ||| |||||| | || | ||||||| |||||||| || || |||||||||| | Sbjct 533050 GCATCCGA-CCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATG 533108 Query 3205 ACGTCGAACGGC---GAGACAACGGTGGCTAATAACCTTACCAGCACGGTTCAGATCTTT 3261 | | ||| |||||| | || |||||||| || || | ||||| ||| Sbjct 533109 GAGGCAGCAGGCACAAAGACAA---TTGCCAATAACCTAACGTCAACCATCCAGATTTTT 533165 Query 3262 GCGGACTCGTCGTACGAACTGCCGTACGTGATGG---ATGCGGGTCAAGAGGGCAGCCTG 3318 || || | || | ||||| || ||||| | |||| | ||||| || || Sbjct 533166 GCAGATGACACACACCAGCTGCCATATGTGATTGGAAATGCCACT---GAGGGGTGCTTG 533222 Query 3319 CCTCCTTTTCCCAACGACGTCTTTATGGTGCCCCAGTACGGCTACTG 3365 || |||||||| || || |||||| |||| |||||| | ||||| Sbjct 533223 CCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGTACTG 533269 Score = 136 bits (150), Expect = 1e-28 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1339 AGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACA 1398 ||||| ||| | ||| |||||||| ||| | || || || || | || || | || Sbjct 531143 AGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCA 531202 Query 1399 TCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGA 1458 ||| ||| || || |||| || ||||| || || ||||| | |||||||| ||||||| Sbjct 531203 TCGTGGAGGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGA 531262 Query 1459 ACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1518 ||||||| ||||| || || || || ||||||||||| ||||||||||| || ||||||| Sbjct 531263 ACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGA 531322 Query 1519 CGGCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGGCGG 1558 | || | |||||| || || ||||| |||| || Sbjct 531323 CTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGG 531362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15132926039140