Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq49 181 3e-42 >seq49 Length=1158978 Score = 181 bits (200), Expect = 3e-42 Identities = 273/387 (71%), Gaps = 1/387 (0%) Strand=Plus/Plus Query 1287 GCTGGGCCCAGAAAAGGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCGGCCACCA 1346 ||||||||| | |||| ||| ||||| |||||||| | | | || || |||| Sbjct 531128 GCTGGGCCCGGTGGGAGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCA 531187 Query 1347 CGGGCAAGACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCA 1406 | ||||||| | ||||| ||| || || |||| || ||||| || || ||||| | | Sbjct 531188 CCAGCAAGACAAGCATCGTGGAGGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAA 531247 Query 1407 ACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGG 1466 ||||||| |||||||||||||| |||||||| || || || ||||||||||| ||||||| Sbjct 531248 ACTGGACTAATGAGAACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGG 531307 Query 1467 AGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCA 1526 |||| || |||||||| || | || ||||| || || |||||| | || || Sbjct 531308 AGGAAGGAAAGATGACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGG 531367 Query 1527 AGGTGC-GCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATC 1585 |||| | || || ||||| || || || | || || || || || || || | Sbjct 531368 CTGTGCGGGGTTGATCAAAACTGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTT 531427 Query 1586 GTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCAC 1645 | ||| || || | | ||| || ||| |||| ||||||||||| ||||| || || Sbjct 531428 ATTACCAGTAATACATATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACAT 531487 Query 1646 CAGCAGCCGTTGCAGGACCGGATGTTC 1672 || | || ||| |||| | |||||| Sbjct 531488 AAGGAACCTTTGGAGGAAAGAATGTTC 531514 Score = 111 bits (122), Expect = 5e-21 Identities = 120/158 (76%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 3038 CTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGATTTCAACAGATTCCACTGCCACTT 3097 |||||| || ||||||||||| |||| || | || |||||||||||||| ||||||| Sbjct 532950 CTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTG 533008 Query 3098 TTCACCACGTGACTGGCAGCGACTCATCAACAACAATTGGGGATTCCGGCCCAAGAGACT 3157 || || ||||| ||||| |||||||||||| | ||||| |||| || ||| Sbjct 533009 GAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCGACCAAAGGCTTG 533068 Query 3158 CAACTTCAAACTCTTCAACATCCAAGTCAAGGAGGTCA 3195 | ||||| | |||||||| ||||| |||||||||| Sbjct 533069 TAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCA 533106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14976224142285