Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_002077.1
Length=4718
Score E
Sequences producing significant alignments: (Bits) Value
seq49 181 3e-42
>seq49
Length=1158978
Score = 181 bits (200), Expect = 3e-42
Identities = 273/387 (71%), Gaps = 1/387 (0%)
Strand=Plus/Plus
Query 1287 GCTGGGCCCAGAAAAGGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCGGCCACCA 1346
||||||||| | |||| ||| ||||| |||||||| | | | || || ||||
Sbjct 531128 GCTGGGCCCGGTGGGAGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCA 531187
Query 1347 CGGGCAAGACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCA 1406
| ||||||| | ||||| ||| || || |||| || ||||| || || ||||| | |
Sbjct 531188 CCAGCAAGACAAGCATCGTGGAGGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAA 531247
Query 1407 ACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGG 1466
||||||| |||||||||||||| |||||||| || || || ||||||||||| |||||||
Sbjct 531248 ACTGGACTAATGAGAACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGG 531307
Query 1467 AGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCA 1526
|||| || |||||||| || | || ||||| || || |||||| | || ||
Sbjct 531308 AGGAAGGAAAGATGACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGG 531367
Query 1527 AGGTGC-GCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATC 1585
|||| | || || ||||| || || || | || || || || || || || |
Sbjct 531368 CTGTGCGGGGTTGATCAAAACTGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTT 531427
Query 1586 GTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCAC 1645
| ||| || || | | ||| || ||| |||| ||||||||||| ||||| || ||
Sbjct 531428 ATTACCAGTAATACATATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACAT 531487
Query 1646 CAGCAGCCGTTGCAGGACCGGATGTTC 1672
|| | || ||| |||| | ||||||
Sbjct 531488 AAGGAACCTTTGGAGGAAAGAATGTTC 531514
Score = 111 bits (122), Expect = 5e-21
Identities = 120/158 (76%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 3038 CTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGATTTCAACAGATTCCACTGCCACTT 3097
|||||| || ||||||||||| |||| || | || |||||||||||||| |||||||
Sbjct 532950 CTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTG 533008
Query 3098 TTCACCACGTGACTGGCAGCGACTCATCAACAACAATTGGGGATTCCGGCCCAAGAGACT 3157
|| || ||||| ||||| |||||||||||| | ||||| |||| || |||
Sbjct 533009 GAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCGACCAAAGGCTTG 533068
Query 3158 CAACTTCAAACTCTTCAACATCCAAGTCAAGGAGGTCA 3195
| ||||| | |||||||| ||||| ||||||||||
Sbjct 533069 TAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCA 533106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14976224142285
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |