Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq49 221 4e-54 >seq49 Length=1158978 Score = 221 bits (244), Expect = 4e-54 Identities = 268/364 (74%), Gaps = 1/364 (0%) Strand=Plus/Plus Query 1218 CAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACCGGCAAGACCAACATCGCGGA 1277 |||| | ||| | | ||| | | | ||| |||||||||| ||||||| | ||||| ||| Sbjct 531150 CAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 531209 Query 1278 GGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCC 1337 ||||||||||| ||||||||| || ||||| || | |||||||| || ||||||||||| Sbjct 531210 GGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCC 531269 Query 1338 GTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAGGAGGGCAAAATGACCGCCAA 1397 ||||| ||||| || || || ||| | || ||||||||||| || || ||||| || Sbjct 531270 TTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAA 531329 Query 1398 AGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCTCGGGTG-AGAGTGGACCAAAAAT 1456 | | || || | || || || ||| |||| || | ||| | || || ||||| | Sbjct 531330 AATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGATCAAAACT 531389 Query 1457 GCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGTAACACCAACATGT 1516 | |||| ||| || | || ||||| ||||| || ||||||||||||| || | | || Sbjct 531390 GTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGT 531449 Query 1517 GTTATGTCATCGACGGGAACACGACCACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGA 1576 || ||| | || ||||||| || || || || |||||| | || |||||||| || | Sbjct 531450 GTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAACCTTTGGAGGAAAGAA 531509 Query 1577 TGTT 1580 |||| Sbjct 531510 TGTT 531513 Score = 111 bits (122), Expect = 5e-21 Identities = 309/469 (66%), Gaps = 15/469 (3%) Strand=Plus/Plus Query 2937 TCCTCCGGAAATTGGCATTGCGATTCCCAATGGCT-GGAAAACGGAGTCGTCACTCGAAC 2995 ||||| |||||||||||| | ||||| ||||||| || || | | || |||||| | Sbjct 532817 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATCTCA-TCACCACTCGTTC 532874 Query 2996 CACCCGAACCTGGGTCTTGCCCAGCTACAACAACCACCTGTACAAACGAATCCAAGGACC 3055 |||| |||| ||||| | ||| ||| ||||| | || ||||| | || |||| Sbjct 532875 CACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATTAAAGG--- 532931 Query 3056 CAGCGGAGGCNNNNNNNNNNNNNNATTCTTTGGATTCAGCACCCCCTGGGGATACTTTGA 3115 || | || | ||| || | ||||||||| |||| ||| | || Sbjct 532932 CA----ATGCCTCTGACATGTCCTA--CTTGGGTTACAGCACCCC-TGGGCCTACCTCGA 532984 Query 3116 CTACAATCGATTCCACTGCCACTTTTCCCCGCGAGACTGGCAACGACTCATCAACAACAA 3175 || ||| ||||||| ||||||| || |||||||| || || |||||||||||| | Sbjct 532985 CTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTA 533044 Query 3176 CTGGGGCATCCGTCCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAAGAGGT 3235 |||||||||||| || || || | | | | | || ||||| || ||||| ||||| Sbjct 533045 CTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGT 533104 Query 3236 CACGGTCCAAGACTTCAACACCACCATCGGCAACAACCTCACCAGTACGGTCCAGGTCTT 3295 || || || || | || || | ||| ||||| || || ||||| | || Sbjct 533105 CATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATTTT 533164 Query 3296 TGCGGACAAGGACTACCAACTGCCGTACGTCCTCGGATCGGCTACCGAAGGCACCTT-CC 3354 ||| || | |||| ||||| || || | ||| || || || || ||| || Sbjct 533165 TGCAGATGACACACACCAGCTGCCATATGTGATTGGAAATGCCACTGAGGGGTGCTTGCC 533224 Query 3355 CGCCGTTCCCAGCGGATATCTACACGATCCCGCAGTACGGGTACTGCAC 3403 ||| ||||| | ||| | | | | | || |||||| |||||||||| Sbjct 533225 CGCTTTTCCC-GGTGATGTTTTTATGTTGCCTCAGTACTGGTACTGCAC 533272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14899472192805