Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_004828.1
Length=4694
Score E
Sequences producing significant alignments: (Bits) Value
seq49 221 4e-54
>seq49
Length=1158978
Score = 221 bits (244), Expect = 4e-54
Identities = 268/364 (74%), Gaps = 1/364 (0%)
Strand=Plus/Plus
Query 1218 CAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACCGGCAAGACCAACATCGCGGA 1277
|||| | ||| | | ||| | | | ||| |||||||||| ||||||| | ||||| |||
Sbjct 531150 CAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 531209
Query 1278 GGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCC 1337
||||||||||| ||||||||| || ||||| || | |||||||| || |||||||||||
Sbjct 531210 GGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCC 531269
Query 1338 GTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAGGAGGGCAAAATGACCGCCAA 1397
||||| ||||| || || || ||| | || ||||||||||| || || ||||| ||
Sbjct 531270 TTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAA 531329
Query 1398 AGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCTCGGGTG-AGAGTGGACCAAAAAT 1456
| | || || | || || || ||| |||| || | ||| | || || ||||| |
Sbjct 531330 AATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGATCAAAACT 531389
Query 1457 GCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGTAACACCAACATGT 1516
| |||| ||| || | || ||||| ||||| || ||||||||||||| || | | ||
Sbjct 531390 GTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGT 531449
Query 1517 GTTATGTCATCGACGGGAACACGACCACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGA 1576
|| ||| | || ||||||| || || || || |||||| | || |||||||| || |
Sbjct 531450 GTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAACCTTTGGAGGAAAGAA 531509
Query 1577 TGTT 1580
||||
Sbjct 531510 TGTT 531513
Score = 111 bits (122), Expect = 5e-21
Identities = 309/469 (66%), Gaps = 15/469 (3%)
Strand=Plus/Plus
Query 2937 TCCTCCGGAAATTGGCATTGCGATTCCCAATGGCT-GGAAAACGGAGTCGTCACTCGAAC 2995
||||| |||||||||||| | ||||| ||||||| || || | | || |||||| |
Sbjct 532817 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATCTCA-TCACCACTCGTTC 532874
Query 2996 CACCCGAACCTGGGTCTTGCCCAGCTACAACAACCACCTGTACAAACGAATCCAAGGACC 3055
|||| |||| ||||| | ||| ||| ||||| | || ||||| | || ||||
Sbjct 532875 CACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATTAAAGG--- 532931
Query 3056 CAGCGGAGGCNNNNNNNNNNNNNNATTCTTTGGATTCAGCACCCCCTGGGGATACTTTGA 3115
|| | || | ||| || | ||||||||| |||| ||| | ||
Sbjct 532932 CA----ATGCCTCTGACATGTCCTA--CTTGGGTTACAGCACCCC-TGGGCCTACCTCGA 532984
Query 3116 CTACAATCGATTCCACTGCCACTTTTCCCCGCGAGACTGGCAACGACTCATCAACAACAA 3175
|| ||| ||||||| ||||||| || |||||||| || || |||||||||||| |
Sbjct 532985 CTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTA 533044
Query 3176 CTGGGGCATCCGTCCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAAGAGGT 3235
|||||||||||| || || || | | | | | || ||||| || ||||| |||||
Sbjct 533045 CTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGT 533104
Query 3236 CACGGTCCAAGACTTCAACACCACCATCGGCAACAACCTCACCAGTACGGTCCAGGTCTT 3295
|| || || || | || || | ||| ||||| || || ||||| | ||
Sbjct 533105 CATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATTTT 533164
Query 3296 TGCGGACAAGGACTACCAACTGCCGTACGTCCTCGGATCGGCTACCGAAGGCACCTT-CC 3354
||| || | |||| ||||| || || | ||| || || || || ||| ||
Sbjct 533165 TGCAGATGACACACACCAGCTGCCATATGTGATTGGAAATGCCACTGAGGGGTGCTTGCC 533224
Query 3355 CGCCGTTCCCAGCGGATATCTACACGATCCCGCAGTACGGGTACTGCAC 3403
||| ||||| | ||| | | | | | || |||||| ||||||||||
Sbjct 533225 CGCTTTTCCC-GGTGATGTTTTTATGTTGCCTCAGTACTGGTACTGCAC 533272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14899472192805
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |