Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_005889.1
Length=4693
Score E
Sequences producing significant alignments: (Bits) Value
seq49 170 6e-39
>seq49
Length=1158978
Score = 170 bits (188), Expect = 6e-39
Identities = 253/364 (70%), Gaps = 1/364 (0%)
Strand=Plus/Plus
Query 1331 AAGAGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAA 1390
||| | ||| || ||||| | || |||| ||||||||| | ||||| | ||||| |||
Sbjct 531151 AAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAG 531210
Query 1391 GCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNN 1450
|| || | | | ||||| ||||||||||||| ||||||||||||||||||||
Sbjct 531211 GCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCCT 531270
Query 1451 NNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAG 1510
|| || ||| |||| ||||||||||| ||||||||||| || ||
Sbjct 531271 TTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAAA 531330
Query 1511 GTGGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTAC-GAGTGGATCAAAAATG 1569
| || || | || || ||||| ||||| |||| || | | || |||||||| ||
Sbjct 531331 ATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGATCAAAACTG 531390
Query 1570 TAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTAACATGTG 1629
|||| ||||| ||| | || | || || || |||| ||| ||||| | | |||
Sbjct 531391 TAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGTG 531450
Query 1630 TGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCAT 1689
|| ||||| ||||||||| ||| ||||| ||||| || | || |||| || | ||
Sbjct 531451 TGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAACCTTTGGAGGAAAGAAT 531510
Query 1690 GTTC 1693
||||
Sbjct 531511 GTTC 531514
Score = 131 bits (144), Expect = 5e-27
Identities = 219/308 (71%), Gaps = 8/308 (3%)
Strand=Plus/Plus
Query 3025 CCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAGAGACTGGCA 3084
|||||||| ||| | ||||| ||| | ||||| ||||||| || ||||||| ||
Sbjct 532967 CCCCTGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCA 533026
Query 3085 AAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCA-AGTCCGCATCTTCA 3143
|||||||||||||| ||||||| | || ||||| || || | | || || ||||
Sbjct 533027 GCGGCTCATCAACAACTACTGGGGCATCCG-ACCAAAGGCTTGTAGAATCAAAATTTTCA 533085
Query 3144 ACATCCAAGTTAAGGAGGTCACGACGTCTAACGGGGA-GACGACCGTATCCAACAACCTC 3202
|||| |||||||||||||||| | | | | | || | | ||| | |||| |||||
Sbjct 533086 ACATACAAGTTAAGGAGGTCATGGAGGC-AGCAGGCACAAAGACAATTGCCAATAACCTA 533144
Query 3203 ACCAGCACGGTCCAGATCTTTGCGGACAGCACGTACGAGCTCCCGTACGTGA-TGGATGC 3261
|| || ||||||| ||||| || ||| || |||| || || |||| ||||
Sbjct 533145 ACGTCAACCATCCAGATTTTTGCAGATGACACACACCAGCTGCCATATGTGATTGGA--A 533202
Query 3262 AGGTCA-GGAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGCCTCAGTACG 3320
| | || ||||| ||||||| |||| ||| || || || ||| |||||||||||
Sbjct 533203 ATGCCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACT 533262
Query 3321 GGTACTGC 3328
||||||||
Sbjct 533263 GGTACTGC 533270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14896274194910
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |