Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq49 170 6e-39 >seq49 Length=1158978 Score = 170 bits (188), Expect = 6e-39 Identities = 253/364 (70%), Gaps = 1/364 (0%) Strand=Plus/Plus Query 1331 AAGAGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAA 1390 ||| | ||| || ||||| | || |||| ||||||||| | ||||| | ||||| ||| Sbjct 531151 AAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAG 531210 Query 1391 GCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNN 1450 || || | | | ||||| ||||||||||||| |||||||||||||||||||| Sbjct 531211 GCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCCT 531270 Query 1451 NNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAG 1510 || || ||| |||| ||||||||||| ||||||||||| || || Sbjct 531271 TTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAAA 531330 Query 1511 GTGGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTAC-GAGTGGATCAAAAATG 1569 | || || | || || ||||| ||||| |||| || | | || |||||||| || Sbjct 531331 ATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGATCAAAACTG 531390 Query 1570 TAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTAACATGTG 1629 |||| ||||| ||| | || | || || || |||| ||| ||||| | | ||| Sbjct 531391 TAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGTG 531450 Query 1630 TGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCAT 1689 || ||||| ||||||||| ||| ||||| ||||| || | || |||| || | || Sbjct 531451 TGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAACCTTTGGAGGAAAGAAT 531510 Query 1690 GTTC 1693 |||| Sbjct 531511 GTTC 531514 Score = 131 bits (144), Expect = 5e-27 Identities = 219/308 (71%), Gaps = 8/308 (3%) Strand=Plus/Plus Query 3025 CCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAGAGACTGGCA 3084 |||||||| ||| | ||||| ||| | ||||| ||||||| || ||||||| || Sbjct 532967 CCCCTGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCA 533026 Query 3085 AAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCA-AGTCCGCATCTTCA 3143 |||||||||||||| ||||||| | || ||||| || || | | || || |||| Sbjct 533027 GCGGCTCATCAACAACTACTGGGGCATCCG-ACCAAAGGCTTGTAGAATCAAAATTTTCA 533085 Query 3144 ACATCCAAGTTAAGGAGGTCACGACGTCTAACGGGGA-GACGACCGTATCCAACAACCTC 3202 |||| |||||||||||||||| | | | | | || | | ||| | |||| ||||| Sbjct 533086 ACATACAAGTTAAGGAGGTCATGGAGGC-AGCAGGCACAAAGACAATTGCCAATAACCTA 533144 Query 3203 ACCAGCACGGTCCAGATCTTTGCGGACAGCACGTACGAGCTCCCGTACGTGA-TGGATGC 3261 || || ||||||| ||||| || ||| || |||| || || |||| |||| Sbjct 533145 ACGTCAACCATCCAGATTTTTGCAGATGACACACACCAGCTGCCATATGTGATTGGA--A 533202 Query 3262 AGGTCA-GGAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGCCTCAGTACG 3320 | | || ||||| ||||||| |||| ||| || || || ||| ||||||||||| Sbjct 533203 ATGCCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACT 533262 Query 3321 GGTACTGC 3328 |||||||| Sbjct 533263 GGTACTGC 533270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14896274194910