Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_006147.2
Length=5132
Score E
Sequences producing significant alignments: (Bits) Value
seq49 302 1e-78
>seq49
Length=1158978
Score = 302 bits (334), Expect = 1e-78
Identities = 298/378 (79%), Gaps = 9/378 (2%)
Strand=Plus/Plus
Query 1520 GAATTCAACAAAAGAAATGCCATATGGCTCTACGGACCTGCGACCACCGGAAAGACCAAC 1579
|| |||||||| | || ||||| ||| ||||| |||||||||||||| | ||||| | |
Sbjct 531142 GAGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGC 531201
Query 1580 ATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAG 1639
|| | ||||||||||||| |||||| || || |||||||||| |||||||||||||||
Sbjct 531202 ATCGTGGAGGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAG 531261
Query 1640 AACTTCCCATTTAATGACTGCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAAAATG 1699
||||| || || |||||||| || ||||| ||| | || ||||||||||| ||||| |||
Sbjct 531262 AACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATG 531321
Query 1700 ACCAATAAAGTAGTGGAATCCGCAAAAGCGATACTgggggggTCTGCTGTAC-GAGTTGA 1758
|| | |||| | || || || || ||||| || |||| |||| ||||| | | |||||
Sbjct 531322 ACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGA 531381
Query 1759 TCAAAAGTGTAAGGGGTCTGTTTGTATTGAACCTACTCCTGTAATAATTACCAGTAATAC 1818
|||||| ||||| || ||||| |||||||| || |||||| | ||||||||||||||
Sbjct 531382 TCAAAACTGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATAC 531441
Query 1819 TGATA--TGTGCATGATTGTGGATGGAAATTCTACTACAATGGAACACA--GAATTCCTT 1874
||| ||||| || | || ||||| || ||||| ||||||| | ||| ||||
Sbjct 531442 ATATAAGTGTGC-TG-TGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAA--CCTT 531497
Query 1875 TGGAGGAAAGAATGTTCC 1892
||||||||||||||||||
Sbjct 531498 TGGAGGAAAGAATGTTCC 531515
Score = 179 bits (198), Expect = 1e-41
Identities = 394/574 (69%), Gaps = 26/574 (5%)
Strand=Plus/Plus
Query 3108 CCTCAGGAAATTGGCATTGCGATTCCCAATGGCT-GGGAGACACAGTCATTACCAAGACT 3166
||||||||||||||||| | ||||| ||||||| |||| | || ||| || |
Sbjct 532818 CCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATCTCA-TCACCACTCGTTCC 532875
Query 3167 ACAAGAACCTGGGTCCTGCCAAGCTACAACAACCACATGTACCAAGCC-ATCACAAGCGG 3225
|| ||||| ||||| || || ||| ||||| | | ||| |||| || | | ||
Sbjct 532876 ACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTAC-AAGCAGATTAAAGGC-- 532932
Query 3226 AACAAACCCAGACTCAAATACCCAATATGCTGGATACAGCACCCCCTGGGGGTACTTTGA 3285
|| || || | || || | || || ||||||||||| |||| ||| | ||
Sbjct 532933 ---AATGCCT--CTGACATGTCCTACTTG--GGTTACAGCACCCC-TGGGCCTACCTCGA 532984
Query 3286 TTTCAACAGATTCCACTGCCATTTCTCTCCAAGAGACTGGCAGAGACTCATCAACAACCA 3345
|||||||||||||| ||||| | ||| ||||||| ||| | |||||||||||| |
Sbjct 532985 CTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTA 533044
Query 3346 TTGGGGGATTAGACCGAAAGCACTCAAATTCAAGATATTCAATGTGCAAGTTAAAGAAGT 3405
||||| || |||| || || | | |||| || ||||| | |||||||| || ||
Sbjct 533045 CTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGT 533104
Query 3406 CACGACGCAAGACCAG--ACAAAGACTATTGCTAACAACCTTACCTCTACAATCCAGATA 3463
|| | | || ||| |||||||| ||||| || ||||| || || || ||||||||
Sbjct 533105 CATGGAGGCAG--CAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATT 533162
Query 3464 TTCACGGATAATGAACACCAGCTGCCCTATGTTCTGGGCTCGGCCACGGAGGGGACGATG 3523
|| | ||| | |||||||||||| ||||| | || ||||| |||||| ||
Sbjct 533163 TTTGCAGATGACACACACCAGCTGCCATATGTGATTGGAAATGCCACTGAGGGGTGCTTG 533222
Query 3524 CCACCGTTCCCCTCAGATGTGTATGCCTTGCCCCAGTACGGCTACTGCACAATGCACACC 3583
|| | || ||| ||||| | | ||||| |||||| | |||||||| |||||||
Sbjct 533223 CCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGTACTGCACTGTGCACACG 533282
Query 3584 A--ACCAGAGTGGAGCGAGATTC---AATGACAGAAGTGCCTTCTATTGCTTAGAGTACT 3638
| | ||||| ||| | | || | | | | || || |||||| |||| ||||
Sbjct 533283 AAGAGCAGAG-GGAAC-ACATCCCCTACTCCACGCTCAGCTTTTTATTGCCTAGAATACT 533340
Query 3639 TCCCCAGTCAGATGCTGAGAACAGGGAATAATTT 3672
| |||| |||||||| | || || ||||||||
Sbjct 533341 TTTCCAGGCAGATGCTTCGCACCGGCAATAATTT 533374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16300195270815
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |