Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq49 302 1e-78 >seq49 Length=1158978 Score = 302 bits (334), Expect = 1e-78 Identities = 298/378 (79%), Gaps = 9/378 (2%) Strand=Plus/Plus Query 1520 GAATTCAACAAAAGAAATGCCATATGGCTCTACGGACCTGCGACCACCGGAAAGACCAAC 1579 || |||||||| | || ||||| ||| ||||| |||||||||||||| | ||||| | | Sbjct 531142 GAGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGC 531201 Query 1580 ATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAG 1639 || | ||||||||||||| |||||| || || |||||||||| ||||||||||||||| Sbjct 531202 ATCGTGGAGGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAG 531261 Query 1640 AACTTCCCATTTAATGACTGCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAAAATG 1699 ||||| || || |||||||| || ||||| ||| | || ||||||||||| ||||| ||| Sbjct 531262 AACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATG 531321 Query 1700 ACCAATAAAGTAGTGGAATCCGCAAAAGCGATACTgggggggTCTGCTGTAC-GAGTTGA 1758 || | |||| | || || || || ||||| || |||| |||| ||||| | | ||||| Sbjct 531322 ACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGA 531381 Query 1759 TCAAAAGTGTAAGGGGTCTGTTTGTATTGAACCTACTCCTGTAATAATTACCAGTAATAC 1818 |||||| ||||| || ||||| |||||||| || |||||| | |||||||||||||| Sbjct 531382 TCAAAACTGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATAC 531441 Query 1819 TGATA--TGTGCATGATTGTGGATGGAAATTCTACTACAATGGAACACA--GAATTCCTT 1874 ||| ||||| || | || ||||| || ||||| ||||||| | ||| |||| Sbjct 531442 ATATAAGTGTGC-TG-TGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAA--CCTT 531497 Query 1875 TGGAGGAAAGAATGTTCC 1892 |||||||||||||||||| Sbjct 531498 TGGAGGAAAGAATGTTCC 531515 Score = 179 bits (198), Expect = 1e-41 Identities = 394/574 (69%), Gaps = 26/574 (5%) Strand=Plus/Plus Query 3108 CCTCAGGAAATTGGCATTGCGATTCCCAATGGCT-GGGAGACACAGTCATTACCAAGACT 3166 ||||||||||||||||| | ||||| ||||||| |||| | || ||| || | Sbjct 532818 CCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATCTCA-TCACCACTCGTTCC 532875 Query 3167 ACAAGAACCTGGGTCCTGCCAAGCTACAACAACCACATGTACCAAGCC-ATCACAAGCGG 3225 || ||||| ||||| || || ||| ||||| | | ||| |||| || | | || Sbjct 532876 ACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTAC-AAGCAGATTAAAGGC-- 532932 Query 3226 AACAAACCCAGACTCAAATACCCAATATGCTGGATACAGCACCCCCTGGGGGTACTTTGA 3285 || || || | || || | || || ||||||||||| |||| ||| | || Sbjct 532933 ---AATGCCT--CTGACATGTCCTACTTG--GGTTACAGCACCCC-TGGGCCTACCTCGA 532984 Query 3286 TTTCAACAGATTCCACTGCCATTTCTCTCCAAGAGACTGGCAGAGACTCATCAACAACCA 3345 |||||||||||||| ||||| | ||| ||||||| ||| | |||||||||||| | Sbjct 532985 CTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTA 533044 Query 3346 TTGGGGGATTAGACCGAAAGCACTCAAATTCAAGATATTCAATGTGCAAGTTAAAGAAGT 3405 ||||| || |||| || || | | |||| || ||||| | |||||||| || || Sbjct 533045 CTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGT 533104 Query 3406 CACGACGCAAGACCAG--ACAAAGACTATTGCTAACAACCTTACCTCTACAATCCAGATA 3463 || | | || ||| |||||||| ||||| || ||||| || || || |||||||| Sbjct 533105 CATGGAGGCAG--CAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATT 533162 Query 3464 TTCACGGATAATGAACACCAGCTGCCCTATGTTCTGGGCTCGGCCACGGAGGGGACGATG 3523 || | ||| | |||||||||||| ||||| | || ||||| |||||| || Sbjct 533163 TTTGCAGATGACACACACCAGCTGCCATATGTGATTGGAAATGCCACTGAGGGGTGCTTG 533222 Query 3524 CCACCGTTCCCCTCAGATGTGTATGCCTTGCCCCAGTACGGCTACTGCACAATGCACACC 3583 || | || ||| ||||| | | ||||| |||||| | |||||||| ||||||| Sbjct 533223 CCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGTACTGCACTGTGCACACG 533282 Query 3584 A--ACCAGAGTGGAGCGAGATTC---AATGACAGAAGTGCCTTCTATTGCTTAGAGTACT 3638 | | ||||| ||| | | || | | | | || || |||||| |||| |||| Sbjct 533283 AAGAGCAGAG-GGAAC-ACATCCCCTACTCCACGCTCAGCTTTTTATTGCCTAGAATACT 533340 Query 3639 TCCCCAGTCAGATGCTGAGAACAGGGAATAATTT 3672 | |||| |||||||| | || || |||||||| Sbjct 533341 TTTCCAGGCAGATGCTTCGCACCGGCAATAATTT 533374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16300195270815