Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_006148.1
Length=4432
Score E
Sequences producing significant alignments: (Bits) Value
seq49 131 5e-27
>seq49
Length=1158978
Score = 131 bits (144), Expect = 5e-27
Identities = 203/286 (71%), Gaps = 8/286 (3%)
Strand=Plus/Plus
Query 3795 CAGGTATGGTGTGGTCTAATAGAGACATTTACTTACAGGGGCCTATTTGGGCTAAAATTC 3854
|||||||| | ||| ||| |||||| || | ||||| ||||||||||| |||||||
Sbjct 533921 CAGGTATG-TATGG----ATAAAGACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTC 533975
Query 3855 CAAATACAGATGGACATTTTCATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATC 3914
| | || ||||| ||||||| ||| ||| | ||||| || ||||| | ||||||
Sbjct 533976 CTGACACTGATGGCAATTTTCAGCCTCATCCTAACATGGGAGGCTTTGGGTGCAAACATT 534035
Query 3915 CTCCGCCTATGATTCTGATCAAAAATACACCAGTTCCTGCTGATCCTCCAACTACCTTCA 3974
| || | ||||||||| |||||||| ||||| ||||| || ||||| | ||||||
Sbjct 534036 CACCTCTGATGATTCTGCAGAAAAATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCA 534095
Query 3975 ATCCAATGCCACAGACTAGT-TTCATTACTGAATACAGTACAGGACAAGTAACTGTTGAA 4033
| || ||| | ||| || |||| | | || || || || ||||| || |||
Sbjct 534096 CTGAAACGCCTATTA--AGTCTTTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAA 534153
Query 4034 ATGTTGTGGGAGGTACAGAAAGAATCCTCCAAAAGATGGAATCCAG 4079
|| |||||| | | |||||||| |||| | ||||||||||
Sbjct 534154 ATTGATTGGGAGCGAAAATAAGAATCCAGCAAACGCTGGAATCCAG 534199
Score = 104 bits (114), Expect = 7e-19
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 1280 CAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACCATCATCGCTCA 1339
|||| | ||| |||||||| | || | || || || ||| |||| || | ||||| |
Sbjct 531150 CAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 531209
Query 1340 AGCTATTGCACATGCTGTTAAACTGTTTGCTGGTGTTAATTGGACTAATGAAAACTTTCC 1399
|||||||| | |||||| | | | || ||| || ||||||||||| ||||||||
Sbjct 531210 GGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCC 531269
Query 1400 CTTCTGTAACTGTCCAGGGAAACTGCTTATCTGGTGGGAGGAGGGCAAGATGACAAACAA 1459
||| | |||| || || || | || ||||||||||| || |||||||| | ||
Sbjct 531270 TTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAA 531329
Query 1460 AATGGTGGAGACGGCTAAATGTATACTGGGGGGATCTGCTGT 1501
||| || ||| | |||||| || |||| || | |||||
Sbjct 531330 AATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGT 531371
Score = 104 bits (114), Expect = 7e-19
Identities = 203/295 (69%), Gaps = 4/295 (1%)
Strand=Plus/Plus
Query 2831 CCCTGGGGGTACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCCCGAGACTGGCAA 2890
||||||| ||| | |||||||| ||||||| ||||||| ||||||||||| ||
Sbjct 532968 CCCTGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAG 533027
Query 2891 AGACTCATCAACAACCACACAGGCATCAGGCCGAAAGGACT-CAAAATCAAAGTCTTTAA 2949
| |||||||||||| || |||||| | || ||||| | | ||||||| | || ||
Sbjct 533028 CGGCTCATCAACAACTACTGGGGCATCCGACC-AAAGGCTTGTAGAATCAAAATTTTCAA 533086
Query 2950 CGTCCAAGTCAAAGAAGTTA-CAACACAAGATTCAACGAAAACAATTGCCAACAATCTCA 3008
| | ||||| || || || | | || | | || || ||||||||||| || || |
Sbjct 533087 CATACAAGTTAAGGAGGTCATGGAGGCAGCAGGC-ACAAAGACAATTGCCAATAACCTAA 533145
Query 3009 CCAGCACCGTACAGATCTTTGCGGACGAGAACTACGACTTACCATATGTATTAGGCAGTG 3068
| ||| | ||||| ||||| || || | || | | |||||||| | || | ||
Sbjct 533146 CGTCAACCATCCAGATTTTTGCAGATGACACACACCAGCTGCCATATGTGATTGGAAATG 533205
Query 3069 CTACACAAGGCACATTTCCTCCATTTCCCAATGATGTATTTATGTTACCACAATA 3123
| || | || || || | |||||| |||||| |||||||| || || ||
Sbjct 533206 CCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTA 533260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14061596744315
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |