Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq49 131 5e-27 >seq49 Length=1158978 Score = 131 bits (144), Expect = 5e-27 Identities = 203/286 (71%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 3795 CAGGTATGGTGTGGTCTAATAGAGACATTTACTTACAGGGGCCTATTTGGGCTAAAATTC 3854 |||||||| | ||| ||| |||||| || | ||||| ||||||||||| ||||||| Sbjct 533921 CAGGTATG-TATGG----ATAAAGACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTC 533975 Query 3855 CAAATACAGATGGACATTTTCATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATC 3914 | | || ||||| ||||||| ||| ||| | ||||| || ||||| | |||||| Sbjct 533976 CTGACACTGATGGCAATTTTCAGCCTCATCCTAACATGGGAGGCTTTGGGTGCAAACATT 534035 Query 3915 CTCCGCCTATGATTCTGATCAAAAATACACCAGTTCCTGCTGATCCTCCAACTACCTTCA 3974 | || | ||||||||| |||||||| ||||| ||||| || ||||| | |||||| Sbjct 534036 CACCTCTGATGATTCTGCAGAAAAATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCA 534095 Query 3975 ATCCAATGCCACAGACTAGT-TTCATTACTGAATACAGTACAGGACAAGTAACTGTTGAA 4033 | || ||| | ||| || |||| | | || || || || ||||| || ||| Sbjct 534096 CTGAAACGCCTATTA--AGTCTTTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAA 534153 Query 4034 ATGTTGTGGGAGGTACAGAAAGAATCCTCCAAAAGATGGAATCCAG 4079 || |||||| | | |||||||| |||| | |||||||||| Sbjct 534154 ATTGATTGGGAGCGAAAATAAGAATCCAGCAAACGCTGGAATCCAG 534199 Score = 104 bits (114), Expect = 7e-19 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 1280 CAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACCATCATCGCTCA 1339 |||| | ||| |||||||| | || | || || || ||| |||| || | ||||| | Sbjct 531150 CAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 531209 Query 1340 AGCTATTGCACATGCTGTTAAACTGTTTGCTGGTGTTAATTGGACTAATGAAAACTTTCC 1399 |||||||| | |||||| | | | || ||| || ||||||||||| |||||||| Sbjct 531210 GGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCC 531269 Query 1400 CTTCTGTAACTGTCCAGGGAAACTGCTTATCTGGTGGGAGGAGGGCAAGATGACAAACAA 1459 ||| | |||| || || || | || ||||||||||| || |||||||| | || Sbjct 531270 TTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAA 531329 Query 1460 AATGGTGGAGACGGCTAAATGTATACTGGGGGGATCTGCTGT 1501 ||| || ||| | |||||| || |||| || | ||||| Sbjct 531330 AATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGT 531371 Score = 104 bits (114), Expect = 7e-19 Identities = 203/295 (69%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 2831 CCCTGGGGGTACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCCCGAGACTGGCAA 2890 ||||||| ||| | |||||||| ||||||| ||||||| ||||||||||| || Sbjct 532968 CCCTGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAG 533027 Query 2891 AGACTCATCAACAACCACACAGGCATCAGGCCGAAAGGACT-CAAAATCAAAGTCTTTAA 2949 | |||||||||||| || |||||| | || ||||| | | ||||||| | || || Sbjct 533028 CGGCTCATCAACAACTACTGGGGCATCCGACC-AAAGGCTTGTAGAATCAAAATTTTCAA 533086 Query 2950 CGTCCAAGTCAAAGAAGTTA-CAACACAAGATTCAACGAAAACAATTGCCAACAATCTCA 3008 | | ||||| || || || | | || | | || || ||||||||||| || || | Sbjct 533087 CATACAAGTTAAGGAGGTCATGGAGGCAGCAGGC-ACAAAGACAATTGCCAATAACCTAA 533145 Query 3009 CCAGCACCGTACAGATCTTTGCGGACGAGAACTACGACTTACCATATGTATTAGGCAGTG 3068 | ||| | ||||| ||||| || || | || | | |||||||| | || | || Sbjct 533146 CGTCAACCATCCAGATTTTTGCAGATGACACACACCAGCTGCCATATGTGATTGGAAATG 533205 Query 3069 CTACACAAGGCACATTTCCTCCATTTCCCAATGATGTATTTATGTTACCACAATA 3123 | || | || || || | |||||| |||||| |||||||| || || || Sbjct 533206 CCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTA 533260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14061596744315