Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq49 241 4e-60 >seq49 Length=1158978 Score = 241 bits (266), Expect = 4e-60 Identities = 276/370 (75%), Gaps = 1/370 (0%) Strand=Plus/Plus Query 1316 TTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATC 1375 ||||||||| | ||| || ||||| ||||| |||| || || ||| ||||||| | |||| Sbjct 531145 TTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATC 531204 Query 1376 GCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAAC 1435 | |||||| || |||| ||||||| ||||| ||||| | |||||||| ||||| ||| Sbjct 531205 GTGGAGGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAAC 531264 Query 1436 TTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACC 1495 ||||| || |||||||| || || || ||| | |||||||||||||| ||||||||||| Sbjct 531265 TTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACT 531324 Query 1496 AACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGC-GGGTCGATCA 1554 | || | || || || || || ||||| |||| || | |||| |||| ||||| Sbjct 531325 AGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGATCA 531384 Query 1555 GAAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAA 1614 || |||||| ||||| |||||||| | || ||||| || | || |||||| | Sbjct 531385 AAACTGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATA 531444 Query 1615 CATGTGTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGA 1674 | ||||| ||||| |||||||| ||| ||||| ||||| || | || ||||||| Sbjct 531445 TAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAACCTTTGGAGGA 531504 Query 1675 CCGCATGTTC 1684 | |||||| Sbjct 531505 AAGAATGTTC 531514 Score = 187 bits (206), Expect = 7e-44 Identities = 361/526 (69%), Gaps = 11/526 (2%) Strand=Plus/Plus Query 2991 CCTACTTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCACT 3050 ||||||| || ||||||||||| |||| ||| | ||||| ||| | ||||| |||||| Sbjct 532949 CCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACT 533007 Query 3051 GGAGCCCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTCCC 3110 |||| ||||||||||| || | ||||||||||||||||||||| || |||| | | Sbjct 533008 GGAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCGACCAAAGGCTT 533067 Query 3111 TCAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTCACGG-TGCAGGACTCCACCACN 3169 ||| ||||||| |||||||| ||||| || ||||||| || |||| | ||| | Sbjct 533068 GTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCA-GGCACAAAG 533126 Query 3170 NNNATCGCCAACAACCTCACCTCCACCGTCCAAGTGTTTACGGACGACGACTACCAGCTG 3229 || ||||| ||||| || || ||| |||| | ||| | || ||| |||||||| Sbjct 533127 ACAATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACACACCAGCTG 533186 Query 3230 CCCTACGTCGTCGGCAACGGGACCGAGGGATGCCTGCCGGCCTTCCCTCCGCAGGTCTTT 3289 || || || | || || | || ||||| ||| |||| || || || | || ||| Sbjct 533187 CCATATGTGATTGGAAATGCCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTT 533246 Query 3290 ACGCTGCCGCAGTACGGTTACGCGACGCTGAACCGCGACAACACAG-----AAAATCCCA 3344 | | |||| |||||| | ||| || || || | | || || | | ||| Sbjct 533247 ATGTTGCCTCAGTACTGGTACTGCACTGTGCACACGAAGAGCAGAGGGAACACATCCCCT 533306 Query 3345 CCGAGAGGAGCAGCTTCTT-CTGCCTAGAGTACTTTCCCAGCAAGATGCTGAGAACGGGC 3403 | | | |||||| || |||||||| |||||| |||| ||||||| | || ||| Sbjct 533307 ACTCCACGCTCAGCTTTTTATTGCCTAGAATACTTTTCCAGGCAGATGCTTCGCACCGGC 533366 Query 3404 AACAACTTTGAGTT-TACCTACAACTTTGAGGAGGTGCCCTTCCACTCCAGCTTCGCTCC 3462 || || ||| |||| | || |||||| || | || || ||||| |||| || | Sbjct 533367 AATAA-TTTCAGTTCTCAATATGCCTTTGAAGACCTCCCTTTTCACTCTTGCTTTGCGCA 533425 Query 3463 CAGTCAGAACCTGTTCAAGCTGGCCAACCCGCTGGTGGACCAGTAC 3508 | ||| | || | || ||||||| || || ||||||||| Sbjct 533426 TAATCAAAGAGTGACTCATCTCTCCAACCCCCTTGTCGACCAGTAC 533471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14733176302265