Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq49 181 3e-42 >seq49 Length=1158978 Score = 181 bits (200), Expect = 3e-42 Identities = 273/387 (71%), Gaps = 1/387 (0%) Strand=Plus/Plus Query 1286 GCTGGGCCCAGAAAAAGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCCGCCACCA 1345 ||||||||| | ||||| ||| ||||| |||||||| | | | || || |||| Sbjct 531128 GCTGGGCCCGGTGGGAGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCA 531187 Query 1346 CCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCA 1405 || ||||||| | ||| | ||| || || |||| || ||||| || || ||||| | | Sbjct 531188 CCAGCAAGACAAGCATCGTGGAGGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAA 531247 Query 1406 ACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGG 1465 ||||||| |||||||||||||| ||||| || || || || ||||||||||| ||||||| Sbjct 531248 ACTGGACTAATGAGAACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGG 531307 Query 1466 AGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCA 1525 |||| || |||||||| || | || ||||| || || |||||| | || || Sbjct 531308 AGGAAGGAAAGATGACTAGTAAAATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGG 531367 Query 1526 AGGTGC-GCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATC 1584 |||| | || || ||||| || || || | || || || || || || || | Sbjct 531368 CTGTGCGGGGTTGATCAAAACTGTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTT 531427 Query 1585 GTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCAC 1644 | ||| || || | | ||| || ||| |||| ||||||||||| ||||| || || Sbjct 531428 ATTACCAGTAATACATATAAGTGTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACAT 531487 Query 1645 CAGCAGCCGTTGCAGGACCGGATGTTC 1671 || | || ||| |||| | |||||| Sbjct 531488 AAGGAACCTTTGGAGGAAAGAATGTTC 531514 Score = 141 bits (156), Expect = 3e-30 Identities = 318/470 (68%), Gaps = 26/470 (6%) Strand=Plus/Plus Query 2895 CCTCAGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATTACCACCAG-- 2952 ||||||||||||||||| | ||||| ||||| || | |||| ||||| | Sbjct 532818 CCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATC---TCATCACCACTCGTT 532873 Query 2953 -CACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAATCTCCAGTG 3011 |||| |||| |||| || ||| |||| ||||| | ||||||||||| || Sbjct 532874 CCACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATT------- 532926 Query 3012 AAACTGCAGGTAGTACCAACGACAACACCTACTTCGGCTACAGCACCCCCTGGGGGTATT 3071 || ||| | | || |||| ||||||| || ||||||||||| |||| || Sbjct 532927 -AA----AGGCAATGCCTCTGACATGTCCTACTTGGGTTACAGCACCCC-TGGGCCTACC 532980 Query 3072 TTGACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATCAACA 3131 | ||||| ||||||||||| ||||||| || || ||||| ||||| |||||||||| Sbjct 532981 TCGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACA 533040 Query 3132 ACAACTGGGGATTCCGGCCCAAGAAGCT--GCGGTTCAAGCTCTTCAACATCCAGGTCAA 3189 || ||||||| |||| || ||| ||| | |||| | |||||||| || || || Sbjct 533041 ACTACTGGGGCATCCGACCAAAG--GCTTGTAGAATCAAAATTTTCAACATACAAGTTAA 533098 Query 3190 GGAGGTCACGACGAATGACGGCGTTACGACCATCGCTAATAACCTTACCAGCACGATTCA 3249 |||||||| | | | ||| | ||| || || |||||||| || || || || Sbjct 533099 GGAGGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATCCA 533158 Query 3250 GGTATTCTCGGACTCGGAATACCAGCTGCCGTACGTCCTCGGCTCTGCGCAC-CAGGGCT 3308 | | || | || | |||||||||| || || | || ||| ||| |||| | Sbjct 533159 GATTTTTGCAGATGACACACACCAGCTGCCATATGTGATTGGAAATGC-CACTGAGGGGT 533217 Query 3309 GCCTGCCTCCGTTCCCGGCGGACGTCTTCATGATTCCTCAGTACGGCTAC 3358 || |||| | || || | || || || ||| | ||||||||| | ||| Sbjct 533218 GCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGTAC 533267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14985818135970