Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq49 176 1e-40 >seq49 Length=1158978 Score = 176 bits (194), Expect = 1e-40 Identities = 255/359 (71%), Gaps = 1/359 (0%) Strand=Plus/Plus Query 1212 GCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCA 1271 ||||| |||||||| | | |||| || |||||| ||||||| | ||| | ||| || | Sbjct 531155 GCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTA 531214 Query 1272 TCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCA 1331 | |||| || ||||| || || ||||| | |||||||| |||||||||||||| |||| Sbjct 531215 TTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCCTTTCA 531274 Query 1332 ATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCG 1391 |||| || || || ||||||||||| ||||||||||| || |||||||| || | | Sbjct 531275 ATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAAAATTG 531334 Query 1392 TGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGC-GCGTGGACCAAAAGTGCAAG 1450 | ||||| || || |||||| | || || |||| | || || ||||| || || Sbjct 531335 TAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGATCAAAACTGTAAA 531394 Query 1451 TCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCC 1510 || | || || || || || || || | | ||| || || | | ||| || Sbjct 531395 GGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGTGTGCT 531454 Query 1511 GTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCTCTCCAGGACCGGATGTT 1569 ||| |||| ||||||||||| ||||| || || || | ||| | |||| | ||||| Sbjct 531455 GTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAACCTTTGGAGGAAAGAATGTT 531513 Score = 176 bits (194), Expect = 1e-40 Identities = 413/616 (67%), Gaps = 37/616 (6%) Strand=Plus/Plus Query 2793 TCCTCGGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATCACCACCAG- 2851 ||||| |||||||||||| | ||||| ||||| || | |||||||||| | Sbjct 532817 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATC---TCATCACCACTCGT 532872 Query 2852 --CACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAATCTCCAAC 2909 |||| |||| |||| || ||| |||| ||||| | ||||||||||| || || Sbjct 532873 TCCACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATT---AAA 532929 Query 2910 GGGACATCGGGAGGAGCCACCAACGACAACACCTACTTCGGCTACAGCACCCCCTGGGGG 2969 || | || ||| | |||| ||||||| || ||||||||||| |||| Sbjct 532930 GGCA-AT--------GCCTCT---GACATGTCCTACTTGGGTTACAGCACCCC-TGGGCC 532976 Query 2970 TATTTTGACTTTAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAGCGACTCATC 3029 || | ||||| ||||||||||| ||||||| || || ||||| ||||| |||||| Sbjct 532977 TACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATC 533036 Query 3030 AACAACAACTGGGGATTCCGGCCCAAGAGACTCAGCTTCAAGCTCTTCAACATCCAGGTC 3089 |||||| ||||||| |||| || ||| || |||| | |||||||| || || Sbjct 533037 AACAACTACTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTT 533096 Query 3090 AAGGAGGTCACGCAGAATGAAGGCACCAAGACCATCGCCAATAACCTCACCAGCACCATC 3149 |||||||||| | || | |||||| ||||| || ||||||||||| || |||||| Sbjct 533097 AAGGAGGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATC 533156 Query 3150 CAGGTGTTTACGGACTCGGAGTACCAGCTGCCGTACGTTCTCGGCTCTGCCCACCAGGGC 3209 ||| | ||| | || |||||||||| || || | || |||| |||| Sbjct 533157 CAGATTTTTGCAGATGACACACACCAGCTGCCATATGTGATTGGAAATGCCACTGAGGGG 533216 Query 3210 TGCCTGCCTCCGTTCCCGGCGGACGTGTTCATGATTCCCCAGTACGGCTACCTAACACTC 3269 ||| |||| | || || | || || || ||| | || |||||| | ||| || | Sbjct 533217 TGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGTACTGCACTGTG 533276 Query 3270 AACA----------ACGGTAGTCAGGCCGT--GGGACGCTCCTCCTTCTACTGCCTGGAA 3317 ||| | || | || || | |||||| | || || ||||| ||| Sbjct 533277 CACACGAAGAGCAGAGGGAACACATCCCCTACTCCACGCTCAGCTTTTTATTGCCTAGAA 533336 Query 3318 TACTTTCCTTCGCAGATGCTGAGAACCGGCAACAACTTCCAGTT-TACTTACACCTTCGA 3376 |||||| | ||||||||| | |||||||| || || ||||| | || |||| || Sbjct 533337 TACTTTTCCAGGCAGATGCTTCGCACCGGCAATAA-TTTCAGTTCTCAATATGCCTTTGA 533395 Query 3377 GGACGTGCCTTTCCAC 3392 ||| | ||||| ||| Sbjct 533396 AGACCTCCCTTTTCAC 533411 Score = 93.3 bits (102), Expect = 1e-15 Identities = 189/278 (68%), Gaps = 7/278 (3%) Strand=Plus/Plus Query 3957 GACGTGTACCTGCAGGGTCCCATCTGGGCCAAGATTCCTCACACGGACGGCAACTTCCAC 4016 ||| | || || ||||| || || ||||| || |||||| |||| || ||||| || || Sbjct 533939 GACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAATTTTCAG 533998 Query 4017 CCGTCTCCGCTGATGGGCGGCTTTGGCCTGAAACATCCTCCGCCTCAGATCCTGATCAAG 4076 || ||| ||||| |||||||| |||||| | || | ||| ||| || Sbjct 533999 CCTCATCCTAACATGGGAGGCTTTGGGTGCAAACATTCACCTCTGATGATTCTGCAGAAA 534058 Query 4077 AACACGCCTGTACCTGCGGATCCTCCGACCACCTTCAACCAGTCAAAGC---TGAACTCT 4133 || || || || ||||| || ||||| | |||||| | || || | || ||| Sbjct 534059 AATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGA---AACGCCTATTAAGTCT 534115 Query 4134 TTCATCACGCAATACAGCACCGGACAGGTCAGCGTGGAAATTGAATGGGAGCTGCAGAAG 4193 || || | || || ||| || ||||| | ||||||||||| ||||||| | | Sbjct 534116 TT-ATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCGAAAATAA 534174 Query 4194 GAAAACAGCAAGCGCTGGAACCCCGAGATCCAGTACAC 4231 ||| |||||| |||||||| || | |||||| | ||| Sbjct 534175 GAATCCAGCAAACGCTGGAATCCAGCGATCCAATTCAC 534212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13936874826410