Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_006261.1
Length=4393
Score E
Sequences producing significant alignments: (Bits) Value
seq49 176 1e-40
>seq49
Length=1158978
Score = 176 bits (194), Expect = 1e-40
Identities = 255/359 (71%), Gaps = 1/359 (0%)
Strand=Plus/Plus
Query 1212 GCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCA 1271
||||| |||||||| | | |||| || |||||| ||||||| | ||| | ||| || |
Sbjct 531155 GCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTA 531214
Query 1272 TCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCA 1331
| |||| || ||||| || || ||||| | |||||||| |||||||||||||| ||||
Sbjct 531215 TTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCCTTTCA 531274
Query 1332 ATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCG 1391
|||| || || || ||||||||||| ||||||||||| || |||||||| || | |
Sbjct 531275 ATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAAAATTG 531334
Query 1392 TGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGC-GCGTGGACCAAAAGTGCAAG 1450
| ||||| || || |||||| | || || |||| | || || ||||| || ||
Sbjct 531335 TAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGATCAAAACTGTAAA 531394
Query 1451 TCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCC 1510
|| | || || || || || || || | | ||| || || | | ||| ||
Sbjct 531395 GGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGTGTGCT 531454
Query 1511 GTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCTCTCCAGGACCGGATGTT 1569
||| |||| ||||||||||| ||||| || || || | ||| | |||| | |||||
Sbjct 531455 GTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAACCTTTGGAGGAAAGAATGTT 531513
Score = 176 bits (194), Expect = 1e-40
Identities = 413/616 (67%), Gaps = 37/616 (6%)
Strand=Plus/Plus
Query 2793 TCCTCGGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATCACCACCAG- 2851
||||| |||||||||||| | ||||| ||||| || | |||||||||| |
Sbjct 532817 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATC---TCATCACCACTCGT 532872
Query 2852 --CACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAATCTCCAAC 2909
|||| |||| |||| || ||| |||| ||||| | ||||||||||| || ||
Sbjct 532873 TCCACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATT---AAA 532929
Query 2910 GGGACATCGGGAGGAGCCACCAACGACAACACCTACTTCGGCTACAGCACCCCCTGGGGG 2969
|| | || ||| | |||| ||||||| || ||||||||||| ||||
Sbjct 532930 GGCA-AT--------GCCTCT---GACATGTCCTACTTGGGTTACAGCACCCC-TGGGCC 532976
Query 2970 TATTTTGACTTTAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAGCGACTCATC 3029
|| | ||||| ||||||||||| ||||||| || || ||||| ||||| ||||||
Sbjct 532977 TACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATC 533036
Query 3030 AACAACAACTGGGGATTCCGGCCCAAGAGACTCAGCTTCAAGCTCTTCAACATCCAGGTC 3089
|||||| ||||||| |||| || ||| || |||| | |||||||| || ||
Sbjct 533037 AACAACTACTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAACATACAAGTT 533096
Query 3090 AAGGAGGTCACGCAGAATGAAGGCACCAAGACCATCGCCAATAACCTCACCAGCACCATC 3149
|||||||||| | || | |||||| ||||| || ||||||||||| || ||||||
Sbjct 533097 AAGGAGGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATC 533156
Query 3150 CAGGTGTTTACGGACTCGGAGTACCAGCTGCCGTACGTTCTCGGCTCTGCCCACCAGGGC 3209
||| | ||| | || |||||||||| || || | || |||| ||||
Sbjct 533157 CAGATTTTTGCAGATGACACACACCAGCTGCCATATGTGATTGGAAATGCCACTGAGGGG 533216
Query 3210 TGCCTGCCTCCGTTCCCGGCGGACGTGTTCATGATTCCCCAGTACGGCTACCTAACACTC 3269
||| |||| | || || | || || || ||| | || |||||| | ||| || |
Sbjct 533217 TGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGTACTGCACTGTG 533276
Query 3270 AACA----------ACGGTAGTCAGGCCGT--GGGACGCTCCTCCTTCTACTGCCTGGAA 3317
||| | || | || || | |||||| | || || ||||| |||
Sbjct 533277 CACACGAAGAGCAGAGGGAACACATCCCCTACTCCACGCTCAGCTTTTTATTGCCTAGAA 533336
Query 3318 TACTTTCCTTCGCAGATGCTGAGAACCGGCAACAACTTCCAGTT-TACTTACACCTTCGA 3376
|||||| | ||||||||| | |||||||| || || ||||| | || |||| ||
Sbjct 533337 TACTTTTCCAGGCAGATGCTTCGCACCGGCAATAA-TTTCAGTTCTCAATATGCCTTTGA 533395
Query 3377 GGACGTGCCTTTCCAC 3392
||| | ||||| |||
Sbjct 533396 AGACCTCCCTTTTCAC 533411
Score = 93.3 bits (102), Expect = 1e-15
Identities = 189/278 (68%), Gaps = 7/278 (3%)
Strand=Plus/Plus
Query 3957 GACGTGTACCTGCAGGGTCCCATCTGGGCCAAGATTCCTCACACGGACGGCAACTTCCAC 4016
||| | || || ||||| || || ||||| || |||||| |||| || ||||| || ||
Sbjct 533939 GACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAATTTTCAG 533998
Query 4017 CCGTCTCCGCTGATGGGCGGCTTTGGCCTGAAACATCCTCCGCCTCAGATCCTGATCAAG 4076
|| ||| ||||| |||||||| |||||| | || | ||| ||| ||
Sbjct 533999 CCTCATCCTAACATGGGAGGCTTTGGGTGCAAACATTCACCTCTGATGATTCTGCAGAAA 534058
Query 4077 AACACGCCTGTACCTGCGGATCCTCCGACCACCTTCAACCAGTCAAAGC---TGAACTCT 4133
|| || || || ||||| || ||||| | |||||| | || || | || |||
Sbjct 534059 AATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGA---AACGCCTATTAAGTCT 534115
Query 4134 TTCATCACGCAATACAGCACCGGACAGGTCAGCGTGGAAATTGAATGGGAGCTGCAGAAG 4193
|| || | || || ||| || ||||| | ||||||||||| ||||||| | |
Sbjct 534116 TT-ATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGCGAAAATAA 534174
Query 4194 GAAAACAGCAAGCGCTGGAACCCCGAGATCCAGTACAC 4231
||| |||||| |||||||| || | |||||| | |||
Sbjct 534175 GAATCCAGCAAACGCTGGAATCCAGCGATCCAATTCAC 534212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 13936874826410
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |