Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq49 233 6e-58 >seq49 Length=1158978 Score = 233 bits (258), Expect = 6e-58 Identities = 271/364 (74%), Gaps = 1/364 (0%) Strand=Plus/Plus Query 1218 CAAGCGAAACACGCTGTGGCTGTTCGGACCTGCGACCACCGGCAAGACCAACATCGCGGA 1277 |||| | ||| | | ||| | | | |||||||||||||| ||||||| | ||||| ||| Sbjct 531150 CAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 531209 Query 1278 GGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCC 1337 ||||||||||| ||||||||| || ||||| || | |||||||| || ||||||||||| Sbjct 531210 GGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCC 531269 Query 1338 GTTCAACGACTGCGTCGAAAAGATGATTATCTGGTGGGAAGAGGGCAAAATGACCGCCAA 1397 ||||| ||||| || || |||||| | || |||||||| || || || ||||| || Sbjct 531270 TTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAA 531329 Query 1398 GGTGGTGGAAACGGCTAAAGCGATTCTGGGAGGATCTCGGGTG-AGAGTGGACCAAAAAT 1456 | || || | |||||||| ||| |||| || | ||| | || || ||||| | Sbjct 531330 AATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGATCAAAACT 531389 Query 1457 GCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGTAACACCAACATGT 1516 | |||| ||| || | || ||||| ||||| || ||||||||||||| || | | || Sbjct 531390 GTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGT 531449 Query 1517 GTTATGTCATCGACGGGAACACGACTACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGA 1576 || ||| | || ||||||| ||||| || || |||||| | || |||||||| || | Sbjct 531450 GTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAACCTTTGGAGGAAAGAA 531509 Query 1577 TGTT 1580 |||| Sbjct 531510 TGTT 531513 Score = 114 bits (126), Expect = 4e-22 Identities = 331/504 (66%), Gaps = 19/504 (4%) Strand=Plus/Plus Query 2892 GATGCAGGCCAAGGTGCCGACGGAG---TGGGCAATTCCTCGGGAAATTGGCATTGCGAT 2948 ||||||||| |||| | || ||| | || | ||||| |||||||||||| | ||| Sbjct 532784 GATGCAGGC---GGTGGCAACAGAGGCATTGGAGAGTCCTCAGGAAATTGGCAT-GTGAT 532839 Query 2949 TCCCAATGGCTGGACAACGGAGTCGTTACCCGAACCACTCGAACCTGGGTCCTGCCCAGC 3008 || ||||||| | || || || || |||| |||| ||||| || ||| | Sbjct 532840 TCTCAATGGCAAGGGAATCTCATCACCACTCGTTCCACCAGAACTTGGGTGCTCCCCTCC 532899 Query 3009 TACAACAACCACTTGTACAAGCGGATCCAAGGACCGGGAGGAACCGACCCCAACAATAAA 3068 || ||||| | | ||||||| ||| |||| | | | | ||| Sbjct 532900 TATGACAACAATCTCTACAAGCAGATTAAAGGC---------AATGCCTCTGACATGTCC 532950 Query 3069 TTCTTTGGATTCAGCACCCCCTGGGGGTACTTTGACTACAACCGATTCCACTGCCACTTC 3128 | ||| || | ||||||||| |||| ||| | |||| |||| ||||||| ||||||| Sbjct 532951 TACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGG 533009 Query 3129 TCCCCCCGAGACTGGCAACGACTCATCAACAACAACTGGGGCATCCGACCCAAAGCGATG 3188 ||||||||||| || || |||||||||||| |||||||||||||||| || || Sbjct 533010 AGTCCCCGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCGACCAAAGGCTTGT 533069 Query 3189 CGCTTTAGACTCTTTAACATCCAGGTTAAAGAAGTCACTGTCCAAGACTCCAACACCACC 3248 | | | | | || ||||| || ||||| || |||| | || || | || Sbjct 533070 AGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGACA 533129 Query 3249 ATCGCCAACAACCTCACCAGCACGGTCCAAGTCTTTGCGGACAAGGACTACCAGCTGCCG 3308 || ||||| ||||| || || |||| | ||||| || | |||||||||| Sbjct 533130 ATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACACACCAGCTGCCA 533189 Query 3309 TACGTCCTCGGATCGGCTACAGAGGGCACCTT-CCCGCCGTTCCCAGCGGATATCTACAC 3367 || || | ||| || || ||||| ||| ||||| ||||| | ||| | | | Sbjct 533190 TATGTGATTGGAAATGCCACTGAGGGGTGCTTGCCCGCTTTTCCC-GGTGATGTTTTTAT 533248 Query 3368 GATCCCGCAGTATGGTTACTGCAC 3391 | | || ||||| | |||||||| Sbjct 533249 GTTGCCTCAGTACTGGTACTGCAC 533272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14861096218065