Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_006263.1
Length=4682
Score E
Sequences producing significant alignments: (Bits) Value
seq49 233 6e-58
>seq49
Length=1158978
Score = 233 bits (258), Expect = 6e-58
Identities = 271/364 (74%), Gaps = 1/364 (0%)
Strand=Plus/Plus
Query 1218 CAAGCGAAACACGCTGTGGCTGTTCGGACCTGCGACCACCGGCAAGACCAACATCGCGGA 1277
|||| | ||| | | ||| | | | |||||||||||||| ||||||| | ||||| |||
Sbjct 531150 CAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 531209
Query 1278 GGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCC 1337
||||||||||| ||||||||| || ||||| || | |||||||| || |||||||||||
Sbjct 531210 GGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCC 531269
Query 1338 GTTCAACGACTGCGTCGAAAAGATGATTATCTGGTGGGAAGAGGGCAAAATGACCGCCAA 1397
||||| ||||| || || |||||| | || |||||||| || || || ||||| ||
Sbjct 531270 TTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAA 531329
Query 1398 GGTGGTGGAAACGGCTAAAGCGATTCTGGGAGGATCTCGGGTG-AGAGTGGACCAAAAAT 1456
| || || | |||||||| ||| |||| || | ||| | || || ||||| |
Sbjct 531330 AATTGTAGAGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGCGGGGTTGATCAAAACT 531389
Query 1457 GCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGTAACACCAACATGT 1516
| |||| ||| || | || ||||| ||||| || ||||||||||||| || | | ||
Sbjct 531390 GTAAAGGTTCTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGT 531449
Query 1517 GTTATGTCATCGACGGGAACACGACTACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGA 1576
|| ||| | || ||||||| ||||| || || |||||| | || |||||||| || |
Sbjct 531450 GTGCTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAACCTTTGGAGGAAAGAA 531509
Query 1577 TGTT 1580
||||
Sbjct 531510 TGTT 531513
Score = 114 bits (126), Expect = 4e-22
Identities = 331/504 (66%), Gaps = 19/504 (4%)
Strand=Plus/Plus
Query 2892 GATGCAGGCCAAGGTGCCGACGGAG---TGGGCAATTCCTCGGGAAATTGGCATTGCGAT 2948
||||||||| |||| | || ||| | || | ||||| |||||||||||| | |||
Sbjct 532784 GATGCAGGC---GGTGGCAACAGAGGCATTGGAGAGTCCTCAGGAAATTGGCAT-GTGAT 532839
Query 2949 TCCCAATGGCTGGACAACGGAGTCGTTACCCGAACCACTCGAACCTGGGTCCTGCCCAGC 3008
|| ||||||| | || || || || |||| |||| ||||| || ||| |
Sbjct 532840 TCTCAATGGCAAGGGAATCTCATCACCACTCGTTCCACCAGAACTTGGGTGCTCCCCTCC 532899
Query 3009 TACAACAACCACTTGTACAAGCGGATCCAAGGACCGGGAGGAACCGACCCCAACAATAAA 3068
|| ||||| | | ||||||| ||| |||| | | | | |||
Sbjct 532900 TATGACAACAATCTCTACAAGCAGATTAAAGGC---------AATGCCTCTGACATGTCC 532950
Query 3069 TTCTTTGGATTCAGCACCCCCTGGGGGTACTTTGACTACAACCGATTCCACTGCCACTTC 3128
| ||| || | ||||||||| |||| ||| | |||| |||| ||||||| |||||||
Sbjct 532951 TACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGG 533009
Query 3129 TCCCCCCGAGACTGGCAACGACTCATCAACAACAACTGGGGCATCCGACCCAAAGCGATG 3188
||||||||||| || || |||||||||||| |||||||||||||||| || ||
Sbjct 533010 AGTCCCCGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCGACCAAAGGCTTGT 533069
Query 3189 CGCTTTAGACTCTTTAACATCCAGGTTAAAGAAGTCACTGTCCAAGACTCCAACACCACC 3248
| | | | | || ||||| || ||||| || |||| | || || | ||
Sbjct 533070 AGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGACA 533129
Query 3249 ATCGCCAACAACCTCACCAGCACGGTCCAAGTCTTTGCGGACAAGGACTACCAGCTGCCG 3308
|| ||||| ||||| || || |||| | ||||| || | ||||||||||
Sbjct 533130 ATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGCAGATGACACACACCAGCTGCCA 533189
Query 3309 TACGTCCTCGGATCGGCTACAGAGGGCACCTT-CCCGCCGTTCCCAGCGGATATCTACAC 3367
|| || | ||| || || ||||| ||| ||||| ||||| | ||| | | |
Sbjct 533190 TATGTGATTGGAAATGCCACTGAGGGGTGCTTGCCCGCTTTTCCC-GGTGATGTTTTTAT 533248
Query 3368 GATCCCGCAGTATGGTTACTGCAC 3391
| | || ||||| | ||||||||
Sbjct 533249 GTTGCCTCAGTACTGGTACTGCAC 533272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14861096218065
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |