Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq49 174 4e-40 >seq49 Length=1158978 Score = 174 bits (192), Expect = 4e-40 Identities = 324/462 (70%), Gaps = 19/462 (4%) Strand=Plus/Plus Query 2699 CCTCAGGAAATTGGCATTACGATTCCGTTTGGATGG-ACGGCGCTGTCATCACCAAG--- 2754 ||||||||||||||||| ||||| | |||| | || | ||||||||| Sbjct 532818 CCTCAGGAAATTGGCATGT-GATTC----TCAATGGCAAGGGAATCTCATCACCACTCGT 532872 Query 2755 TCCACCCGAACCTGGAGCCTGCCCGCCTACAACAACCACCTCTACCGCCAGATCCAGTCC 2814 |||||| |||| ||| || ||| |||| ||||| | |||||| ||||| | | Sbjct 532873 TCCACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATTAAAGGC 532932 Query 2815 AGCGGCACCGGAGACGGCACGTACTTTGGTTACAGCACGCCTTGGGGATACTTCGATTTC 2874 | | | | | || | ||||| ||||||||||| ||| ||| ||| |||| ||| Sbjct 532933 AATGCCTCTG---ACATGTCCTACTTGGGTTACAGCACCCCT-GGGCCTACCTCGACTTC 532988 Query 2875 AATCGATTCCACTGCCACTTTTCTCCCAGGGACTGGCAGCGGCTCATCAACAACCACTGG 2934 || ||||||| ||||||| |||| | ||||| |||||||||||||||||| ||||| Sbjct 532989 AACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTACTGG 533048 Query 2935 GGCATCCGCCCCAAGCGGCTCCA-CTTTAAGCTCTTCAACATCCAGGTCAAGGAGGTCAC 2993 |||||||| || ||| | | | | || | |||||||| || || |||||||||| Sbjct 533049 GGCATCCGACCAAAG-GCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCAT 533107 Query 2994 GACGACCGACGGCACCACGACCATCGCCAACAACCTCACCAGCACCATACAGGTCTTTGC 3053 | | | | ||||| | ||| || ||||| ||||| || ||||| ||| | ||||| Sbjct 533108 GGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGC 533167 Query 3054 GGA-CACGGAGTACCAGCTCCCGTACGTGCTCGGCAACGCCCACGAGGGCTGCCTG-CCG 3111 || || | ||||||| || || ||| | || || ||| ||||| ||| || ||| Sbjct 533168 AGATGACACA-CACCAGCTGCCATATGTGATTGGAAATGCCACTGAGGGGTGCTTGCCCG 533226 Query 3112 CCGTTCCCGGCGGACGTCTTCATGCTGCCGCAGTACGCGTAC 3153 | ||||||| || || || ||| |||| |||||| |||| Sbjct 533227 CTTTTCCCGG-TGATGTTTTTATGTTGCCTCAGTACTGGTAC 533267 Score = 120 bits (132), Expect = 8e-24 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 1153 CAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGAACCTCGCCGA 1212 |||| ||||| || ||||| ||| | | || || || ||| ||||||| | | ||| || Sbjct 531150 CAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 531209 Query 1213 GGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAGAACTTCCC 1272 ||| || || | ||||| || || ||||| | |||||||| || |||||||| || Sbjct 531210 GGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCC 531269 Query 1273 CTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGATGAC 1326 ||||| ||||| || || |||||| | || ||||||||||| || |||||||| Sbjct 531270 TTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGAC 531323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13594689051645