Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_014468.1
Length=4286
Score E
Sequences producing significant alignments: (Bits) Value
seq49 174 4e-40
>seq49
Length=1158978
Score = 174 bits (192), Expect = 4e-40
Identities = 324/462 (70%), Gaps = 19/462 (4%)
Strand=Plus/Plus
Query 2699 CCTCAGGAAATTGGCATTACGATTCCGTTTGGATGG-ACGGCGCTGTCATCACCAAG--- 2754
||||||||||||||||| ||||| | |||| | || | |||||||||
Sbjct 532818 CCTCAGGAAATTGGCATGT-GATTC----TCAATGGCAAGGGAATCTCATCACCACTCGT 532872
Query 2755 TCCACCCGAACCTGGAGCCTGCCCGCCTACAACAACCACCTCTACCGCCAGATCCAGTCC 2814
|||||| |||| ||| || ||| |||| ||||| | |||||| ||||| | |
Sbjct 532873 TCCACCAGAACTTGGGTGCTCCCCTCCTATGACAACAATCTCTACAAGCAGATTAAAGGC 532932
Query 2815 AGCGGCACCGGAGACGGCACGTACTTTGGTTACAGCACGCCTTGGGGATACTTCGATTTC 2874
| | | | | || | ||||| ||||||||||| ||| ||| ||| |||| |||
Sbjct 532933 AATGCCTCTG---ACATGTCCTACTTGGGTTACAGCACCCCT-GGGCCTACCTCGACTTC 532988
Query 2875 AATCGATTCCACTGCCACTTTTCTCCCAGGGACTGGCAGCGGCTCATCAACAACCACTGG 2934
|| ||||||| ||||||| |||| | ||||| |||||||||||||||||| |||||
Sbjct 532989 AACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCAGCGGCTCATCAACAACTACTGG 533048
Query 2935 GGCATCCGCCCCAAGCGGCTCCA-CTTTAAGCTCTTCAACATCCAGGTCAAGGAGGTCAC 2993
|||||||| || ||| | | | | || | |||||||| || || ||||||||||
Sbjct 533049 GGCATCCGACCAAAG-GCTTGTAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCAT 533107
Query 2994 GACGACCGACGGCACCACGACCATCGCCAACAACCTCACCAGCACCATACAGGTCTTTGC 3053
| | | | ||||| | ||| || ||||| ||||| || ||||| ||| | |||||
Sbjct 533108 GGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACGTCAACCATCCAGATTTTTGC 533167
Query 3054 GGA-CACGGAGTACCAGCTCCCGTACGTGCTCGGCAACGCCCACGAGGGCTGCCTG-CCG 3111
|| || | ||||||| || || ||| | || || ||| ||||| ||| || |||
Sbjct 533168 AGATGACACA-CACCAGCTGCCATATGTGATTGGAAATGCCACTGAGGGGTGCTTGCCCG 533226
Query 3112 CCGTTCCCGGCGGACGTCTTCATGCTGCCGCAGTACGCGTAC 3153
| ||||||| || || || ||| |||| |||||| ||||
Sbjct 533227 CTTTTCCCGG-TGATGTTTTTATGTTGCCTCAGTACTGGTAC 533267
Score = 120 bits (132), Expect = 8e-24
Identities = 131/174 (75%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 1153 CAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGAACCTCGCCGA 1212
|||| ||||| || ||||| ||| | | || || || ||| ||||||| | | ||| ||
Sbjct 531150 CAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 531209
Query 1213 GGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAGAACTTCCC 1272
||| || || | ||||| || || ||||| | |||||||| || |||||||| ||
Sbjct 531210 GGCTATTGCCCGTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCC 531269
Query 1273 CTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGATGAC 1326
||||| ||||| || || |||||| | || ||||||||||| || ||||||||
Sbjct 531270 TTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGAC 531323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 13594689051645
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |