Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_027429.1
Length=4590
Score E
Sequences producing significant alignments: (Bits) Value
seq49 118 3e-23
>seq49
Length=1158978
Score = 118 bits (130), Expect = 3e-23
Identities = 271/404 (67%), Gaps = 17/404 (4%)
Strand=Plus/Plus
Query 1350 CCATCTGGCTCTACGGACCAGCTACCACCGGAAAGACTATTATAGCGCAAGCTATAGCCC 1409
|||||||| ||||| |||| || |||||| | ||||| | || | | | ||||| ||||
Sbjct 531161 CCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATTGCCC 531220
Query 1410 ACGGTGCTGTCCTCTTT---GGAGGAGTCAATTGGACTAATGAAAACTTTCCCTTTTGTA 1466
||||||| | ||| || | | || ||||||||||| |||||||| || |
Sbjct 531221 ---GTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCCTTTCAATG 531277
Query 1467 ATTGTCCTGGTAAACTGTTGATATGGTGGGAAGAGGGTAAAATGACACAAAAGATGGTCG 1526
| || | ||| || |||| |||||||| || || || ||||| || || || |
Sbjct 531278 ACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAAAATTGTAG 531337
Query 1527 AAACCGCCAAATGTATATTAGGCGGTGCTGTTGTACCTGTGGAT-ATCAAAGGCAAAATG 1585
| | || ||| || || || || | ||| | | || | |||||| || |
Sbjct 531338 AGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGC--GGGGTTGATCAAAACTGTAAAG 531395
Query 1586 GCTGAACTGTG-----TGAAACCACCCCTGTCATTATTACCAGTAATACCAACATGTGTC 1640
| | ||||| |||| | || ||||| |||||||||||||||| | | ||||
Sbjct 531396 GTT---CTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGTGTG 531452
Query 1641 AGGTCTTTGATGGTAACAGTAGCAGTTTTGAACATACCGAACCCTTAGAAGAAAGAATGT 1700
|| ||||||| ||||| | | || ||||||| ||||| || || ||||||||||
Sbjct 531453 CTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAACCTTTGGAGGAAAGAATGT 531512
Query 1701 TTATGTTTAGGTTGAATAAGAAACTGGAACCTGATTTTGGAAAA 1744
| | |||||||| | ||||| | ||||||||| |||
Sbjct 531513 TCCTTTTTAGGTTCACAGTAAAACTCAGGCATGATTTTGGGAAA 531556
Score = 109 bits (120), Expect = 2e-20
Identities = 210/307 (68%), Gaps = 2/307 (1%)
Strand=Plus/Plus
Query 2895 CCCCTGGGCCTACTTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGAGACTGGCA 2954
||||||||||||| | ||||| ||| ||||||| ||||||| ||||||||||| ||
Sbjct 532967 CCCCTGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCA 533026
Query 2955 AAGACTCATTAACAACCATACCGGAATACGACCAGTCGGACTCAAATTCAAGCTGTTCAA 3014
| ||||| |||||| | || || |||||| | | | |||| | |||||
Sbjct 533027 GCGGCTCATCAACAACTACTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAA 533086
Query 3015 CATCCAGGTCAAGGAAATCACAGTACAAGATTCGACCAAAACGATCGCCAACAATCTCAC 3074
||| || || ||||| ||| | || || || || || ||||| || || ||
Sbjct 533087 CATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 533146
Query 3075 CAGCACCGTACAGGTCTTTGCGGA-CACGGAGCACCAGCTCCCGTACGTATTAGGAAATG 3133
||| | ||| | ||||| || || | |||||||| || || || | |||||||
Sbjct 533147 GTCAACCATCCAGATTTTTGCAGATGACACA-CACCAGCTGCCATATGTGATTGGAAATG 533205
Query 3134 CCACGCAGGGCACGTTTCCTCCCTTTCCGGCTGAAGTCTTTCAGTTGCCTCAGTACGGCT 3193
|||| |||| || || | ||||| | ||| || ||| ||||||||||||| | |
Sbjct 533206 CCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGT 533265
Query 3194 ACTGTAC 3200
|||| ||
Sbjct 533266 ACTGCAC 533272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14566880411725
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |