Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_027429.1 Length=4590 Score E Sequences producing significant alignments: (Bits) Value seq49 118 3e-23 >seq49 Length=1158978 Score = 118 bits (130), Expect = 3e-23 Identities = 271/404 (67%), Gaps = 17/404 (4%) Strand=Plus/Plus Query 1350 CCATCTGGCTCTACGGACCAGCTACCACCGGAAAGACTATTATAGCGCAAGCTATAGCCC 1409 |||||||| ||||| |||| || |||||| | ||||| | || | | | ||||| |||| Sbjct 531161 CCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGAGGCTATTGCCC 531220 Query 1410 ACGGTGCTGTCCTCTTT---GGAGGAGTCAATTGGACTAATGAAAACTTTCCCTTTTGTA 1466 ||||||| | ||| || | | || ||||||||||| |||||||| || | Sbjct 531221 ---GTGCTGTGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCCTTTCAATG 531277 Query 1467 ATTGTCCTGGTAAACTGTTGATATGGTGGGAAGAGGGTAAAATGACACAAAAGATGGTCG 1526 | || | ||| || |||| |||||||| || || || ||||| || || || | Sbjct 531278 ACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACTAGTAAAATTGTAG 531337 Query 1527 AAACCGCCAAATGTATATTAGGCGGTGCTGTTGTACCTGTGGAT-ATCAAAGGCAAAATG 1585 | | || ||| || || || || | ||| | | || | |||||| || | Sbjct 531338 AGTCTGCTAAAGCCATTTTGGGTGGGTTGGCTGTGC--GGGGTTGATCAAAACTGTAAAG 531395 Query 1586 GCTGAACTGTG-----TGAAACCACCCCTGTCATTATTACCAGTAATACCAACATGTGTC 1640 | | ||||| |||| | || ||||| |||||||||||||||| | | |||| Sbjct 531396 GTT---CTGTGCAAATTGAACCAACGCCTGTACTTATTACCAGTAATACATATAAGTGTG 531452 Query 1641 AGGTCTTTGATGGTAACAGTAGCAGTTTTGAACATACCGAACCCTTAGAAGAAAGAATGT 1700 || ||||||| ||||| | | || ||||||| ||||| || || |||||||||| Sbjct 531453 CTGTGGTTGATGGGAACAGCACTACCTTGGAACATAAGGAACCTTTGGAGGAAAGAATGT 531512 Query 1701 TTATGTTTAGGTTGAATAAGAAACTGGAACCTGATTTTGGAAAA 1744 | | |||||||| | ||||| | ||||||||| ||| Sbjct 531513 TCCTTTTTAGGTTCACAGTAAAACTCAGGCATGATTTTGGGAAA 531556 Score = 109 bits (120), Expect = 2e-20 Identities = 210/307 (68%), Gaps = 2/307 (1%) Strand=Plus/Plus Query 2895 CCCCTGGGCCTACTTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGAGACTGGCA 2954 ||||||||||||| | ||||| ||| ||||||| ||||||| ||||||||||| || Sbjct 532967 CCCCTGGGCCTACCTCGACTTCAACAGATTCCAGTGCCACTGGAGTCCCCGAGACTGTCA 533026 Query 2955 AAGACTCATTAACAACCATACCGGAATACGACCAGTCGGACTCAAATTCAAGCTGTTCAA 3014 | ||||| |||||| | || || |||||| | | | |||| | ||||| Sbjct 533027 GCGGCTCATCAACAACTACTGGGGCATCCGACCAAAGGCTTGTAGAATCAAAATTTTCAA 533086 Query 3015 CATCCAGGTCAAGGAAATCACAGTACAAGATTCGACCAAAACGATCGCCAACAATCTCAC 3074 ||| || || ||||| ||| | || || || || || ||||| || || || Sbjct 533087 CATACAAGTTAAGGAGGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 533146 Query 3075 CAGCACCGTACAGGTCTTTGCGGA-CACGGAGCACCAGCTCCCGTACGTATTAGGAAATG 3133 ||| | ||| | ||||| || || | |||||||| || || || | ||||||| Sbjct 533147 GTCAACCATCCAGATTTTTGCAGATGACACA-CACCAGCTGCCATATGTGATTGGAAATG 533205 Query 3134 CCACGCAGGGCACGTTTCCTCCCTTTCCGGCTGAAGTCTTTCAGTTGCCTCAGTACGGCT 3193 |||| |||| || || | ||||| | ||| || ||| ||||||||||||| | | Sbjct 533206 CCACTGAGGGGTGCTTGCCCGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGT 533265 Query 3194 ACTGTAC 3200 |||| || Sbjct 533266 ACTGCAC 533272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14566880411725