Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq131076 91.5 5e-15 seq130414 84.2 7e-13 >seq131076 Length=983 Score = 91.5 bits (100), Expect = 5e-15 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1608 TGTGTTAACTGGACTAATGAGAACTTTCCTTTTAATGATTGTGTTGATAAAATGCTGATT 1667 || ||||| || || ||||| || |||||||||||||||| ||| || | || || ||| Sbjct 103 TGGGTTAAATGAACCAATGAAAAATTTCCTTTTAATGATTCTGTGGACAGAAAACTCATT 162 Query 1668 TGGTGGGAGGAGGGAAAAATGACTAATAAGGTTGTTGAATCTGCAAAAGCAATTTTGG 1725 |||||||| ||| ||||| | ||||| || || || ||| | || ||||| || ||| Sbjct 163 TGGTGGGAAGAGAGAAAATTAACTAAAAAAGTGGTAGAAACAGCTAAAGCTGTTATGG 220 >seq130414 Length=94101111 Score = 84.2 bits (92), Expect = 7e-13 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1608 TGTGTTAACTGGACTAATGAGAACTTTCCTTTTAATGATTGTGTTGATAAAATGCTGATT 1667 || ||||| || || ||||| || |||||||||||||||| ||| || | || || ||| Sbjct 19397570 TGGGTTAAATGAACCAATGAAAAATTTCCTTTTAATGATTCTGTGGACAGAAAACTCATT 19397629 Query 1668 TGGTGGGAGGAGGGAAAAATGACTAATAAGGTTGTTGAA 1706 |||||||| ||| ||||| | ||||| || || || ||| Sbjct 19397630 TGGTGGGAAGAGAGAAAATTAACTAAAAAAGTGGTAGAA 19397668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16179700576875