Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq131076 91.5 4e-15 seq130414 89.7 2e-14 >seq131076 Length=983 Score = 91.5 bits (100), Expect = 4e-15 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 1412 TGCGTGAACTGGACCAATGAAAACTTTCCCTTTAATGACTGTGTGGACAAAATGCTCATT 1471 || || || || ||||||||||| ||||| |||||||| | |||||||| || |||||| Sbjct 103 TGGGTTAAATGAACCAATGAAAAATTTCCTTTTAATGATTCTGTGGACAGAAAACTCATT 162 Query 1472 TGGTGGGAGGAGGGAAAGATGACCAACAAGGTGGTTGAATCCGCCAAGGC 1521 |||||||| ||| |||| | || || || ||||| ||| | || || || Sbjct 163 TGGTGGGAAGAGAGAAAATTAACTAAAAAAGTGGTAGAAACAGCTAAAGC 212 >seq130414 Length=94101111 Score = 89.7 bits (98), Expect = 2e-14 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1412 TGCGTGAACTGGACCAATGAAAACTTTCCCTTTAATGACTGTGTGGACAAAATGCTCATT 1471 || || || || ||||||||||| ||||| |||||||| | |||||||| || |||||| Sbjct 19397570 TGGGTTAAATGAACCAATGAAAAATTTCCTTTTAATGATTCTGTGGACAGAAAACTCATT 19397629 Query 1472 TGGTGGGAGGAGGGAAAGATGACCAACAAGGTGGTTGAA 1510 |||||||| ||| |||| | || || || ||||| ||| Sbjct 19397630 TGGTGGGAAGAGAGAAAATTAACTAAAAAAGTGGTAGAA 19397668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14699246806875