Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq28 86.0 2e-13 seq2170 82.4 2e-12 >seq28 Length=4555648 Score = 86.0 bits (94), Expect = 2e-13 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 1602 TATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTAATGATTGTGTTGATAAAATG 1661 ||||| |||||||| ||||| ||||| |||||||| || || ||| ||||| | |||| Sbjct 2752384 TATGGATGTGTTAATTGGACAAATGAAAACTTTCCATTCAAGGATGGTGTTCACAAAAAA 2752325 Query 1662 CTGATTTGGTGGGAGGAGGGAAAAATGACTAATAAGGTTG-TTGAATCTGCAAAAGCAAT 1720 || |||||| | || | |||||||| | | |||| || || || ||||||||||| | Sbjct 2752324 TTGGTTTGGTTGAAGAAAGGAAAAATCA-TGATAAAAATGATTAAAACTGCAAAAGCAGT 2752266 Query 1721 TTTGGGAGG 1729 | | | ||| Sbjct 2752265 TCTAGAAGG 2752257 >seq2170 Length=432677 Score = 82.4 bits (90), Expect = 2e-12 Identities = 95/127 (75%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 1604 TGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTAATGATTGTGTTGATAAAATGCT 1663 ||| |||||||| || || | ||| || |||||||||||||||||| | || | || || Sbjct 263854 TGGTTGTGTTAAATGAACCAGTGAAAATTTTCCTTTTAATGATTGTATGGACAGAAAACT 263913 Query 1664 GATTTGGTGGGAGGAGGGAAAAATGACT-AATAAGGTTGTTGAATCTGCAAAAGCAATTT 1722 ||||||||| | ||| ||||| | ||| || || || ||| | || ||||| ||| Sbjct 263914 CATTTGGTGGAAAGAGAGAAAATTAACTGAAAAAAACAGTAGAAACAGCTAAAGCTATTA 263973 Query 1723 TGGGAGG 1729 |||| || Sbjct 263974 TGGGTGG 263980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16224234048165