Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq14187 163 8e-37 >seq14187 Length=3355950 Score = 163 bits (180), Expect = 8e-37 Identities = 168/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1288 AGTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACA 1347 ||||| |||| | ||| |||||||| | | | ||||| || ||| | ||||| | || Sbjct 1819721 AGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCA 1819780 Query 1348 TCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGA 1407 ||| |||||| || |||| ||| ||| || || || || | ||||||||| ||||||| Sbjct 1819781 TCGTGGAGGCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAGA 1819840 Query 1408 ACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGA 1467 ||||||| ||||| ||||| || || ||||||||||| ||||||||||| || ||||||| Sbjct 1819841 ACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGA 1819900 Query 1468 CCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGG 1507 || || | || | ||| || ||||||||| | || || Sbjct 1819901 CCAGGAAAATTGTAGTGTCTGCTAAAGCCATTTTGGGTGG 1819940 Score = 114 bits (126), Expect = 4e-22 Identities = 235/345 (68%), Gaps = 16/345 (5%) Strand=Plus/Plus Query 2872 TCCTCGGGAAATTGGCATTGCGATTCCACATGG-ATGGGCGACAGAGTCATCACCACCAG 2930 ||||| |||||||||||| | ||||| |||| | ||| | || ||||||| | Sbjct 1821391 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATC----TCGTCACCACTCG 1821445 Query 2931 ---CACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAACAAATTTCCAG 2987 ||| |||| |||| | ||| ||| ||||| | |||||||| || ||| | Sbjct 1821446 TTCCACGAGAACTTGGGTGTTCCCCTTCTATGACAACAATCTCTACAAGCAGATTAAAGG 1821505 Query 2988 CCAATCAGGAGCCTCGAACGACAATCACTACTTTGGCTACAGCACCCCTTGGGGGTATTT 3047 ||| ||||| ||| |||||| || |||||||||||| ||| || | Sbjct 1821506 CCAC------GCCTCCAACATGTCCGCCTACTTGGGTTACAGCACCCCT-GGGCCTACCT 1821558 Query 3048 TGACTTCAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAAAGACTCATCAACAA 3107 ||||||||| || |||| ||||||| || | ||||| || | ||||||||||| Sbjct 1821559 CGACTTCAACGGACTCCAGTGCCACTGGAGTCCCTGAGACTGTCAGCGGCTCATCAACAA 1821618 Query 3108 CAACTGGGGATTCCGACCCAAGAGACTCAACTTCAAGCTCTTTAACATTCAAGTCAAAGA 3167 | ||||||| ||| ||| ||| | || |||| | || ||||| ||||| || || Sbjct 1821619 CTACTGGGGCATCCAACCAAAGGCTCACAGAATCAAAATTTTCAACATACAAGTTAAGGA 1821678 Query 3168 GGTCACGCAGAATGACGGTACGACGACGATTGCCAATAACCTTAC 3212 ||||| | || | || || | ||| |||||||||||||| || Sbjct 1821679 GGTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 1821723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14855807908980