Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq14187 313 8e-82 >seq14187 Length=3355950 Score = 313 bits (346), Expect = 8e-82 Identities = 395/539 (73%), Gaps = 3/539 (1%) Strand=Plus/Plus Query 1334 AGCTGCACTGGAAAATGCCCGTGCTGAAATGTTATTGACAAAGACTGCAACTGATTACCT 1393 ||| |||||||| || | || ||||||||| |||| ||| | || | ||||| Sbjct 1819545 AGCAGCACTGGAGAACGTGCGAGCTGAAATGCCCCTGACGAAGTCGGCCGAAGGCTACCT 1819604 Query 1394 GATAGGAAAAGACCCTGTCCTGGATATAACTAAGAATAGGGTCTATCAAATTCTGAAAAT 1453 | |||| || || ||| ||| || || | ||| | ||| | |||| || | | | Sbjct 1819605 GCTAGGCAAGCTTCCAGTCGGGGACATCACAAGGAACAAGGTGTTTCAACTTTTCCAGGT 1819664 Query 1454 GAATAACTACAACCCTCAATACATAGGAAGTATCCT-GTGCGGCTGGGTGAAGAGAGAGT 1512 |||| ||| |||| | || || ||||| || || ||||| | | |||| Sbjct 1819665 GAATCGGTACGACCCCGTCTTGGCAGCAAACATCCTAGTTCG-CTGGGCCCGGCGGGAGT 1819723 Query 1513 TCAACAAAAGAAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACATTG 1572 ||||||| | |||||||| ||| ||||| ||||||| |||||| | ||||| | ||| | Sbjct 1819724 TCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCG 1819783 Query 1573 CAGAAGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACT 1632 || |||||||||| ||||| || || |||||||||| ||||||||||||||||||| Sbjct 1819784 TGGAGGCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACT 1819843 Query 1633 TTCCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGACTA 1692 ||||||| ||||| || || ||||| ||| |||||||||||||||| ||||| ||||| | Sbjct 1819844 TTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCA 1819903 Query 1693 ATAAGGTTGTTGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGT-CCGGGTAGACCAG 1751 || |||| | ||||| ||||| |||||||| ||||| ||||| | |||| || || Sbjct 1819904 GGAAAATTGTAGTGTCTGCTAAAGCCATTTTGGGTGGGTCGGCTGTGCGGGGTTGATCAA 1819963 Query 1752 AAATGTAAAGGATCTGTTTGTATTGAACCTACTCCTGTAATTATTACTAGTAATACTGAT 1811 ||||||||||| ||||| |||||||| | |||||| ||||||| ||||||| || Sbjct 1819964 AAATGTAAAGGTTCTGTGCAAATTGAACCAATGCCTGTACTTATTACCAGTAATATATAT 1820023 Query 1812 ATGTGTATGATTGTTGATGGCAACTCTACTACAATGGAACATAGAATACCATTAGAGGA 1870 | ||||| |||||||| ||| ||||| ||||||||| ||| || ||||| Sbjct 1820024 AAGTGTACTGGGGTTGATGGGAACAGCACTACCCTGGAACATAAGGAACCTTTGGAGGA 1820082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16221748903195