Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_001729.1
Length=4726
Score E
Sequences producing significant alignments: (Bits) Value
seq14187 147 7e-32
>seq14187
Length=3355950
Score = 147 bits (162), Expect = 7e-32
Identities = 200/277 (72%), Gaps = 4/277 (1%)
Strand=Plus/Plus
Query 4039 GACGTGTACCTTCAAGGACCTATCTGGGCAAAGATTCCTCACACGGATGGACACTTTCAT 4098
||| | || || || || ||||| ||||| || |||||| |||| ||||| | |||||
Sbjct 1822670 GACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAATTTTCAG 1822729
Query 4099 CCTTCTCCTCTGATGGGAGGCTTTGGACTGAAACATCCGCCTCCTCAAATCATGATCAAA 4158
||| |||| |||||||||||||| |||||||| ||||| || || |||
Sbjct 1822730 CCTCATCCTAACATGGGAGGCTTTGGGTACAAACATCCACCTCCAATGATTCTGCAGAAA 1822789
Query 4159 AATACTCCGGTACCGGCAAATCCTCCGACGACTTTCA--GCCCGGCCAAGTTTGCTTCAT 4216
|||||||| || || ||| | ||||| || | |||| | ||| | || || |
Sbjct 1822790 AATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTA--TTAAGTCTT 1822847
Query 4217 TTATCACTCAGTACTCCACTGGACAGGTCAGCGTGGAAATTGAGTGGGAGCTACAGAAAG 4276
|||| | |||||| |||||||| ||||| | ||||||||||| |||||| | | ||
Sbjct 1822848 TTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGAGAAAATCAG 1822907
Query 4277 AAAACAGCAAACGTTGGAATCCAGAGATTCAGTACAC 4313
|| ||||||| | |||||||||||||| || | |||
Sbjct 1822908 AATCCAGCAAATGCTGGAATCCAGAGATCCAATTCAC 1822944
Score = 138 bits (152), Expect = 3e-29
Identities = 239/344 (69%), Gaps = 14/344 (4%)
Strand=Plus/Plus
Query 2878 TCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGGCGACAGAGTCATCACCACCAG- 2936
|||||||||||||||||| | ||||| ||||||| || | || ||||||| |
Sbjct 1821391 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATC---TCGTCACCACTCGT 1821446
Query 2937 --CACCAGAACCTGGGCCCTGCCCACTTACAACAACCATCTCTACAAGCAAATCTCCAGC 2994
||| ||||| |||| | ||| || ||||| ||||||||||||| || ||
Sbjct 1821447 TCCACGAGAACTTGGGTGTTCCCCTTCTATGACAACAATCTCTACAAGCAGATTAAAGGC 1821506
Query 2995 CAATCAGGAGCTTCAAACGACAACCACTACTTTGGCTACAGCACCCCTTGGGGGTATTTT 3054
|| || || ||| | |||||| || |||||||||||| ||| || |
Sbjct 1821507 CAC------GCCTCCAACATGTCCGCCTACTTGGGTTACAGCACCCCT-GGGCCTACCTC 1821559
Query 3055 GACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATTAACAAC 3114
||||| ||| || |||| ||||||| || | ||||| ||||| ||||| ||||||
Sbjct 1821560 GACTTCAACGGACTCCAGTGCCACTGGAGTCCCTGAGACTGTCAGCGGCTCATCAACAAC 1821619
Query 3115 AACTGGGGATTCCGGCCCAAGAAACTCAGCTTCAAGCTCTTCAACATCCAAGTTAGAGGG 3174
||||||| ||| || ||| | ||| |||| | |||||||| ||||||| | |
Sbjct 1821620 TACTGGGGCATCCAACCAAAGGCTCACAGAATCAAAATTTTCAACATACAAGTTAAGGAG 1821679
Query 3175 GTCACGCAGAACGATGGCACGACGACTATTGCCAATAACCTTAC 3218
|||| | || | ||||| | ||| |||||||||||||| ||
Sbjct 1821680 GTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 1821723
Score = 132 bits (146), Expect = 1e-27
Identities = 138/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 1285 AGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACA 1344
||||| ||| | ||| |||||||| ||| | || || || || | || || | ||
Sbjct 1819721 AGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCA 1819780
Query 1345 TCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAATGAGA 1404
||| ||| || || |||| || | ||| || || ||||| | ||||||||| |||||||
Sbjct 1819781 TCGTGGAGGCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAGA 1819840
Query 1405 ACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1464
||||||| ||||| || || || || ||||||||||| ||||||||||| || |||||||
Sbjct 1819841 ACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGA 1819900
Query 1465 C 1465
|
Sbjct 1819901 C 1819901
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15006157386095
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |