Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq14187 147 7e-32 >seq14187 Length=3355950 Score = 147 bits (162), Expect = 7e-32 Identities = 200/277 (72%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 4039 GACGTGTACCTTCAAGGACCTATCTGGGCAAAGATTCCTCACACGGATGGACACTTTCAT 4098 ||| | || || || || ||||| ||||| || |||||| |||| ||||| | ||||| Sbjct 1822670 GACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAATTTTCAG 1822729 Query 4099 CCTTCTCCTCTGATGGGAGGCTTTGGACTGAAACATCCGCCTCCTCAAATCATGATCAAA 4158 ||| |||| |||||||||||||| |||||||| ||||| || || ||| Sbjct 1822730 CCTCATCCTAACATGGGAGGCTTTGGGTACAAACATCCACCTCCAATGATTCTGCAGAAA 1822789 Query 4159 AATACTCCGGTACCGGCAAATCCTCCGACGACTTTCA--GCCCGGCCAAGTTTGCTTCAT 4216 |||||||| || || ||| | ||||| || | |||| | ||| | || || | Sbjct 1822790 AATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTA--TTAAGTCTT 1822847 Query 4217 TTATCACTCAGTACTCCACTGGACAGGTCAGCGTGGAAATTGAGTGGGAGCTACAGAAAG 4276 |||| | |||||| |||||||| ||||| | ||||||||||| |||||| | | || Sbjct 1822848 TTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAGAGAAAATCAG 1822907 Query 4277 AAAACAGCAAACGTTGGAATCCAGAGATTCAGTACAC 4313 || ||||||| | |||||||||||||| || | ||| Sbjct 1822908 AATCCAGCAAATGCTGGAATCCAGAGATCCAATTCAC 1822944 Score = 138 bits (152), Expect = 3e-29 Identities = 239/344 (69%), Gaps = 14/344 (4%) Strand=Plus/Plus Query 2878 TCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGGCGACAGAGTCATCACCACCAG- 2936 |||||||||||||||||| | ||||| ||||||| || | || ||||||| | Sbjct 1821391 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATC---TCGTCACCACTCGT 1821446 Query 2937 --CACCAGAACCTGGGCCCTGCCCACTTACAACAACCATCTCTACAAGCAAATCTCCAGC 2994 ||| ||||| |||| | ||| || ||||| ||||||||||||| || || Sbjct 1821447 TCCACGAGAACTTGGGTGTTCCCCTTCTATGACAACAATCTCTACAAGCAGATTAAAGGC 1821506 Query 2995 CAATCAGGAGCTTCAAACGACAACCACTACTTTGGCTACAGCACCCCTTGGGGGTATTTT 3054 || || || ||| | |||||| || |||||||||||| ||| || | Sbjct 1821507 CAC------GCCTCCAACATGTCCGCCTACTTGGGTTACAGCACCCCT-GGGCCTACCTC 1821559 Query 3055 GACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATTAACAAC 3114 ||||| ||| || |||| ||||||| || | ||||| ||||| ||||| |||||| Sbjct 1821560 GACTTCAACGGACTCCAGTGCCACTGGAGTCCCTGAGACTGTCAGCGGCTCATCAACAAC 1821619 Query 3115 AACTGGGGATTCCGGCCCAAGAAACTCAGCTTCAAGCTCTTCAACATCCAAGTTAGAGGG 3174 ||||||| ||| || ||| | ||| |||| | |||||||| ||||||| | | Sbjct 1821620 TACTGGGGCATCCAACCAAAGGCTCACAGAATCAAAATTTTCAACATACAAGTTAAGGAG 1821679 Query 3175 GTCACGCAGAACGATGGCACGACGACTATTGCCAATAACCTTAC 3218 |||| | || | ||||| | ||| |||||||||||||| || Sbjct 1821680 GTCATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAAC 1821723 Score = 132 bits (146), Expect = 1e-27 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 1285 AGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACA 1344 ||||| ||| | ||| |||||||| ||| | || || || || | || || | || Sbjct 1819721 AGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCA 1819780 Query 1345 TCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAATGAGA 1404 ||| ||| || || |||| || | ||| || || ||||| | ||||||||| ||||||| Sbjct 1819781 TCGTGGAGGCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAGA 1819840 Query 1405 ACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1464 ||||||| ||||| || || || || ||||||||||| ||||||||||| || ||||||| Sbjct 1819841 ACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGA 1819900 Query 1465 C 1465 | Sbjct 1819901 C 1819901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15006157386095