Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq14187 129 2e-26 >seq14187 Length=3355950 Score = 129 bits (142), Expect = 2e-26 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 1339 AGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACA 1398 ||||| ||| | ||| |||||||| ||| | || || || || | || || | || Sbjct 1819721 AGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCA 1819780 Query 1399 TCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGA 1458 ||| ||| || || |||| || | ||| || || ||||| | |||||||| ||||||| Sbjct 1819781 TCGTGGAGGCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAGA 1819840 Query 1459 ACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1518 ||||||| ||||| || || || || ||||||||||| ||||||||||| || ||||||| Sbjct 1819841 ACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGA 1819900 Query 1519 C 1519 | Sbjct 1819901 C 1819901 Score = 127 bits (140), Expect = 6e-26 Identities = 279/410 (68%), Gaps = 26/410 (6%) Strand=Plus/Plus Query 2970 CACCAGAACCTGGGTCTTGCCCACCTACAACAACCACCTCTACAAGC-GACTCGGAGAGA 3028 ||| ||||| ||||| || ||| ||| ||||| | |||||||||| || | | || Sbjct 1821449 CACGAGAACTTGGGTGTTCCCCTTCTATGACAACAATCTCTACAAGCAGATT---AAAGG 1821505 Query 3029 GCCTGCAGTCCAACA------CCTACAACGGATTCTCCACCCCCTGGGGATACTTTGACT 3082 | || ||||||| ||||| || | | |||||| |||| ||| | |||| Sbjct 1821506 CCACGCC-TCCAACATGTCCGCCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACT 1821563 Query 3083 TCAACCGCTTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATCAACAACAACT 3142 ||||| | |||| ||||||| || | ||||| ||||| |||||||||||| ||| Sbjct 1821564 TCAACGGACTCCAGTGCCACTGGAGTCCCTGAGACTGTCAGCGGCTCATCAACAACTACT 1821623 Query 3143 GGGGCATGCGACCCAAAGCCATGCGGGTCAAAATCTTCAACATCCAGGTCAAGGAGGTCA 3202 ||||||| | ||| || || | ||||||| |||||||| || || |||||||||| Sbjct 1821624 GGGGCATCCAACCAAAGGCTCACAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCA 1821683 Query 3203 CGACGTCGAACGGC---GAGACAACGGTGGCTAATAACCTTACCAGCACGGTTCAGATCT 3259 | | | ||| |||||| | || |||||||| || || | ||||| | Sbjct 1821684 TGGAGGCAGCAGGCACAAAGACAA---TTGCCAATAACCTAACATCAACCATCCAGATTT 1821740 Query 3260 TTGCGGACTCGTCGTACGAACTGCCGTACGTGATGG---ATGCGGGTCA-AGAGGGCAGC 3315 |||| || | ||| | ||||| || ||| | | |||| || ||||| || Sbjct 1821741 TTGCAGATGACACATACCAGCTGCCATATGTGGTTGGAAATGC----CACCGAGGGGTGC 1821796 Query 3316 CTGCCTCCTTTTCCCAACGACGTCTTTATGGTGCCCCAGTACGGCTACTG 3365 ||||| |||||||| || || |||||| |||| |||||| | ||||| Sbjct 1821797 TTGCCTGCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGTACTG 1821846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15137313312940