Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq14187 149 2e-32 >seq14187 Length=3355950 Score = 149 bits (164), Expect = 2e-32 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1287 GCTGGGCCCAGAAAAGGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCGGCCACCA 1346 ||||||||| | |||| ||| ||||| |||||||| | | | || || |||| Sbjct 1819706 GCTGGGCCCGGCGGGAGTTCAACAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCA 1819765 Query 1347 CGGGCAAGACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCA 1406 | ||||||| | ||||| ||| || || |||| || | ||| || || ||||| | | Sbjct 1819766 CCAGCAAGACAAGCATCGTGGAGGCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAA 1819825 Query 1407 ACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGG 1466 ||||||| |||||||||||||| |||||||| || || || ||||||||||| ||||||| Sbjct 1819826 ACTGGACTAATGAGAACTTTCCTTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGG 1819885 Query 1467 AGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGG 1521 |||| || |||||||| || | || | ||| || || |||||| | || || Sbjct 1819886 AGGAAGGAAAGATGACCAGGAAAATTGTAGTGTCTGCTAAAGCCATTTTGGGTGG 1819940 Score = 107 bits (118), Expect = 6e-20 Identities = 201/295 (68%), Gaps = 8/295 (3%) Strand=Plus/Plus Query 4047 GATAGAGACGTGTACCTGCAGGGTCCCATTTGGGCCAAAATTCCTCACACAGATGGACAC 4106 |||| |||| | || || ||||| || |||||||| ||||||||| |||| ||||| | Sbjct 1822664 GATAAAGACATCTATCTCCAGGGCCCTATTTGGGCGAAAATTCCTGACACTGATGGCAAT 1822723 Query 4107 TTTCACCCGTCTCCTCTTATGGGCGGCTTTGGACTCAAGAACCCGCCTCCTCAGATCCTC 4166 ||||| || |||| ||||| |||||||| ||| | || ||||| ||| || Sbjct 1822724 TTTCAGCCTCATCCTAACATGGGAGGCTTTGGGTACAAACATCCACCTCCAATGATTCTG 1822783 Query 4167 ATCAAAAACACGCCTGTTCCTGCGAATCCTCCGGCGGAGTTTTCAGCTACAAAGTTTGCT 4226 ||||| || || || ||||| | ||||| |||| || | | || || Sbjct 1822784 CAGAAAAATACTCCAGTCCCTGCAGAACCTCCTGCGGCCTTCACTGAAACGCCTATTAAG 1822843 Query 4227 TCATTCATCACCCAATACTCCACAGGACAAGTGAGTGTGGAAATTGAATGGGAGCTGCAG 4286 || || || | || || ||||| || || || | ||||||||||| |||||| || Sbjct 1822844 TCTTTTATTAGTCAGTATTCCACTGGTCAGGTAACAGTGGAAATTGATTGGGAG----AG 1822899 Query 4287 AA----AGAAAACAGCAAGCGCTGGAATCCCGAAGTGCAGTACACATCCAATTAT 4337 || |||| |||||| |||||||||| || | || | |||| |||||| Sbjct 1822900 AAAATCAGAATCCAGCAAATGCTGGAATCCAGAGATCCAATTCACAAATAATTAT 1822954 Score = 102 bits (112), Expect = 2e-18 Identities = 118/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 3038 CTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGATTTCAACAGATTCCACTGCCACTT 3097 |||||| || ||||||||||| |||| || | || |||||| || |||| ||||||| Sbjct 1821527 CTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGACTTCAACGGACTCCAGTGCCACTG 1821585 Query 3098 TTCACCACGTGACTGGCAGCGACTCATCAACAACAATTGGGGATTCCGGCCCAAGAGACT 3157 || | ||||| ||||| |||||||||||| | ||||| ||| || ||| | Sbjct 1821586 GAGTCCCTGAGACTGTCAGCGGCTCATCAACAACTACTGGGGCATCCAACCAAAGGCTCA 1821645 Query 3158 CAACTTCAAACTCTTCAACATCCAAGTCAAGGAGGTCA 3195 || ||||| | |||||||| ||||| |||||||||| Sbjct 1821646 CAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTCA 1821683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14980565985735