Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq14187 201 3e-48 >seq14187 Length=3355950 Score = 201 bits (222), Expect = 3e-48 Identities = 262/360 (73%), Gaps = 2/360 (1%) Strand=Plus/Plus Query 1218 CAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACCGGCAAGACCAACATCGCGGA 1277 |||| | ||| | | ||| | | | ||| |||||||||| ||||||| | ||||| ||| Sbjct 1819728 CAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 1819787 Query 1278 GGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCC 1337 ||||||||||| ||||| ||| || ||||| || | |||||||| || ||||||||||| Sbjct 1819788 GGCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCC 1819847 Query 1338 GTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAGGAGGGCAAAATGACCGCCAA 1397 ||||| ||||| || || || ||| | || ||||||||||| || || |||||| || Sbjct 1819848 TTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGGAA 1819907 Query 1398 AGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCTCGGGTG-AGAGTGGACCAAAAAT 1456 | | || | | || || || ||| |||| || || ||| | || || ||||||| Sbjct 1819908 AATTGTAGTGTCTGCTAAAGCCATTTTGGGTGGGTCGGCTGTGCGGGGTTGATCAAAAAT 1819967 Query 1457 GCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGTAACACCAACATGT 1516 | |||| ||| || | || ||||| | ||| || ||||||||||||| | | | || Sbjct 1819968 GTAAAGGTTCTGTGCAAATTGAACCAATGCCTGTACTTATTACCAGTAATATATATAAGT 1820027 Query 1517 GTTATGTCATCGACGGGAACACGACCACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGA 1576 || || | || ||||||| || || | || |||||| | || |||||||| |||| Sbjct 1820028 GTACTGGGGTTGATGGGAACAGCACTACCCTGGAACATAAGGAACCTTTGGAGGA-AGGA 1820086 Score = 105 bits (116), Expect = 2e-19 Identities = 302/467 (65%), Gaps = 8/467 (2%) Strand=Plus/Plus Query 2937 TCCTCCGGAAATTGGCATTGCGATTCCCAATGGCTGGAAAACGGAGTCGTCACTCGAACC 2996 ||||| |||||||||||| | ||||| ||||||| | || ||| |||||| || Sbjct 1821391 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATCTCGTCACCACTCGTTCC 1821449 Query 2997 ACCCGAACCTGGGTCTTGCCCAGCTACAACAACCACCTGTACAAACGAATCCAAGGACCC 3056 || |||| ||||| || ||| ||| ||||| | || ||||| | || |||| | | Sbjct 1821450 ACGAGAACTTGGGTGTTCCCCTTCTATGACAACAATCTCTACAAGCAGATTAAAGGCCAC 1821509 Query 3057 AGCGGAGGCNNNNNNNNNNNNNNATTCTTTGGATTCAGCACCCCCTGGGGATACTTTGAC 3116 | | | ||| || | ||||||||| |||| ||| | ||| Sbjct 1821510 ------GCCTCCAACATGTCCGCCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGAC 1821562 Query 3117 TACAATCGATTCCACTGCCACTTTTCCCCGCGAGACTGGCAACGACTCATCAACAACAAC 3176 | ||| || |||| ||||||| || ||||||| || || |||||||||||| || Sbjct 1821563 TTCAACGGACTCCAGTGCCACTGGAGTCCCTGAGACTGTCAGCGGCTCATCAACAACTAC 1821622 Query 3177 TGGGGCATCCGTCCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAAGAGGTC 3236 |||||||||| || || || | | | | | || ||||| || ||||| |||||| Sbjct 1821623 TGGGGCATCCAACCAAAGGCTCACAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTC 1821682 Query 3237 ACGGTCCAAGACTTCAACACCACCATCGGCAACAACCTCACCAGTACGGTCCAGGTCTTT 3296 | || || || | || || | ||| ||||| || || ||||| | ||| Sbjct 1821683 ATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACATCAACCATCCAGATTTTT 1821742 Query 3297 GCGGACAAGGACTACCAACTGCCGTACGTCCTCGGATCGGCTACCGAAGGCACCTTCCCG 3356 || || | ||||| ||||| || || | ||| || ||||| || ||| || Sbjct 1821743 GCAGATGACACATACCAGCTGCCATATGTGGTTGGAAATGCCACCGAGGGGTGCTTGCCT 1821802 Query 3357 CCGTTCCCAGCGGATATCTACACGATCCCGCAGTACGGGTACTGCAC 3403 | || || | ||| | | | | | || |||||| |||||||||| Sbjct 1821803 GCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGTACTGCAC 1821849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14903791784655