Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_004828.1
Length=4694
Score E
Sequences producing significant alignments: (Bits) Value
seq14187 201 3e-48
>seq14187
Length=3355950
Score = 201 bits (222), Expect = 3e-48
Identities = 262/360 (73%), Gaps = 2/360 (1%)
Strand=Plus/Plus
Query 1218 CAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACCGGCAAGACCAACATCGCGGA 1277
|||| | ||| | | ||| | | | ||| |||||||||| ||||||| | ||||| |||
Sbjct 1819728 CAAGTGCAACGCCATCTGGTTCTACAGACCTGCGACCACCAGCAAGACAAGCATCGTGGA 1819787
Query 1278 GGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCC 1337
||||||||||| ||||| ||| || ||||| || | |||||||| || |||||||||||
Sbjct 1819788 GGCTATTGCCCGTGCTGGGCCATTTTATGGCTGTGGAAACTGGACTAATGAGAACTTTCC 1819847
Query 1338 GTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAGGAGGGCAAAATGACCGCCAA 1397
||||| ||||| || || || ||| | || ||||||||||| || || |||||| ||
Sbjct 1819848 TTTCAATGACTGGGTAGATAAGATGGTGATTTGGTGGGAGGAAGGAAAGATGACCAGGAA 1819907
Query 1398 AGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCTCGGGTG-AGAGTGGACCAAAAAT 1456
| | || | | || || || ||| |||| || || ||| | || || |||||||
Sbjct 1819908 AATTGTAGTGTCTGCTAAAGCCATTTTGGGTGGGTCGGCTGTGCGGGGTTGATCAAAAAT 1819967
Query 1457 GCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGTAACACCAACATGT 1516
| |||| ||| || | || ||||| | ||| || ||||||||||||| | | | ||
Sbjct 1819968 GTAAAGGTTCTGTGCAAATTGAACCAATGCCTGTACTTATTACCAGTAATATATATAAGT 1820027
Query 1517 GTTATGTCATCGACGGGAACACGACCACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGA 1576
|| || | || ||||||| || || | || |||||| | || |||||||| ||||
Sbjct 1820028 GTACTGGGGTTGATGGGAACAGCACTACCCTGGAACATAAGGAACCTTTGGAGGA-AGGA 1820086
Score = 105 bits (116), Expect = 2e-19
Identities = 302/467 (65%), Gaps = 8/467 (2%)
Strand=Plus/Plus
Query 2937 TCCTCCGGAAATTGGCATTGCGATTCCCAATGGCTGGAAAACGGAGTCGTCACTCGAACC 2996
||||| |||||||||||| | ||||| ||||||| | || ||| |||||| ||
Sbjct 1821391 TCCTCAGGAAATTGGCAT-GTGATTCTCAATGGCAAGGGAATCTCGTCACCACTCGTTCC 1821449
Query 2997 ACCCGAACCTGGGTCTTGCCCAGCTACAACAACCACCTGTACAAACGAATCCAAGGACCC 3056
|| |||| ||||| || ||| ||| ||||| | || ||||| | || |||| | |
Sbjct 1821450 ACGAGAACTTGGGTGTTCCCCTTCTATGACAACAATCTCTACAAGCAGATTAAAGGCCAC 1821509
Query 3057 AGCGGAGGCNNNNNNNNNNNNNNATTCTTTGGATTCAGCACCCCCTGGGGATACTTTGAC 3116
| | | ||| || | ||||||||| |||| ||| | |||
Sbjct 1821510 ------GCCTCCAACATGTCCGCCTACTTGGGTTACAGCACCCC-TGGGCCTACCTCGAC 1821562
Query 3117 TACAATCGATTCCACTGCCACTTTTCCCCGCGAGACTGGCAACGACTCATCAACAACAAC 3176
| ||| || |||| ||||||| || ||||||| || || |||||||||||| ||
Sbjct 1821563 TTCAACGGACTCCAGTGCCACTGGAGTCCCTGAGACTGTCAGCGGCTCATCAACAACTAC 1821622
Query 3177 TGGGGCATCCGTCCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAAGAGGTC 3236
|||||||||| || || || | | | | | || ||||| || ||||| ||||||
Sbjct 1821623 TGGGGCATCCAACCAAAGGCTCACAGAATCAAAATTTTCAACATACAAGTTAAGGAGGTC 1821682
Query 3237 ACGGTCCAAGACTTCAACACCACCATCGGCAACAACCTCACCAGTACGGTCCAGGTCTTT 3296
| || || || | || || | ||| ||||| || || ||||| | |||
Sbjct 1821683 ATGGAGGCAGCAGGCACAAAGACAATTGCCAATAACCTAACATCAACCATCCAGATTTTT 1821742
Query 3297 GCGGACAAGGACTACCAACTGCCGTACGTCCTCGGATCGGCTACCGAAGGCACCTTCCCG 3356
|| || | ||||| ||||| || || | ||| || ||||| || ||| ||
Sbjct 1821743 GCAGATGACACATACCAGCTGCCATATGTGGTTGGAAATGCCACCGAGGGGTGCTTGCCT 1821802
Query 3357 CCGTTCCCAGCGGATATCTACACGATCCCGCAGTACGGGTACTGCAC 3403
| || || | ||| | | | | | || |||||| ||||||||||
Sbjct 1821803 GCTTTTCCCGGTGATGTTTTTATGTTGCCTCAGTACTGGTACTGCAC 1821849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14903791784655
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |